BAC Information

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BAC

Clone NameB6Ng01-077M13
ChromosomeY (Build37)4 (Build37)
Map Location 1,120,586 - 1,121,07848,936,526 - 48,937,755
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M13.bB6Ng01-077M13.g
ACCDH893668DH893669
length5001,218
definitionDH893668|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M13, 5' end.DH893669|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,078)(48,936,526 - 48,937,755)
sequence
gaattcttttttttttccattttttattaggtatttagctcatttacatt
tccaatgctataccaaaagtcccccatatccacccacccccactcccctg
cccacccactccccctttttggccctggtgttcccctgtactggggcata
taaagtttgcaagtccaatgggcctctctttccagtgatggccgactagg
ccatcttttgatatatatgcagctagagtcaagagctccggggtactggt
tagttcataatgttgttccacctatagagttgcagatccctttagctcct
tggctactttctctagctcctccgttgagagccctatgatccatccatta
gctgactgtgagcatccacttctgtgtttgctaggccccgggatagtctc
acaagaggcagctacatctgggtcctttcaataaaatcttgctagtgtat
gcaatggtgtcagcgtttggatgctgattatggggtggatccctggatat

gaattctgtgagattgaagtcaatgacaggcactttgtggagagcaatga
atgactgggttgtgtgcaagcacaattcagagctgtcaaacttgaaagcg
gacatattgggctattgtaaagttgagactagccttgtgagccccactct
tcccttttgaaggctggtggttgccatggttacagctacatggttaggct
tatttatagctatacactatctttagtgaactccacaacagatgagagaa
aaattcaactgtgaagctatctaagagcattgaaaatacttaggatgagc
aataggataaaatatacaccagagaatctcaaaacaccacggagaaccct
atttaaacaactgttttgtgaataatgttctggaaaaaagtcaaaaaata
aggtcacagaaatggccaaaacccaggattctgcctgcctatgccagccc
ctgctactacaatttaaagcaaaaattctgggtagattccaaaaagaaat
gaattgtctttactatttatcatatgcaaaacaaccacacatgtgtgtct
ctctgttatcacaataacaacgtacgattggtactgcttttatcccgatt
ttacatgttacgaaagtgcaatacatgaaagataaacttccaaagcctca
tggtgaggaatgaccaggcttaagcaagagcccccttactctgtttccag
taattttcagcactgtgatatactgacattgatatgattaaataaaagtc
tgaagaagacaaaaatcattgcgatgccaagagcttatacttaacctgca
tttaagaggaactcaactctaaaatggctattttgataagggaaaacaca
gaattgatgctctatgcaacctcaaatctctaacaagacaaagcatccca
tacttatttcaagtggctgtcagcattccttcataaggaagctgatatgc
tttatgtcaaattaatatggtttgaactgtggctatatgtaaatcttcat
gacaagtcttctgtaagtaagtaaaacttatccaattacttgaaaagaac
tgacagtggtagctacagagtcgcctttccttcattcttaacagccatga
agcagatattatttgattccctagtagagcgctgaaggcaatgtattagg
actctctaaaacactcagatgtactcactcgaatgttatgtactggagct
ctcaggctgtttctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121078
seq2: B6Ng01-077M13.b_55_547

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| |||||||||||||||| |||| ||||||||||||||||||||||||
seq2  TAATGTTGTTCCACCTATAGAGTTGCAGATCCCTTTAGCTCCTTGGCTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCGTTGAGAGCCCTATGATCCATCCATTAGCTGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  GTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGGATAGTCTCACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  450
       ||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GCAGCTACATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  450

seq1  TGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGCTAT  493
      ||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATAT  493

seq1: chr4_48936526_48937755
seq2: B6Ng01-077M13.g_70_1287 (reverse)

seq1  CATGAGAAACA-ACTGAGGACT-CAGTCCTATTACATACTGAGTGTGTGT  48
      |||||||||||  |||||  || |||| | || |||| |   | ||| ||
seq2  CATGAGAAACAGCCTGAGAGCTCCAGTAC-ATAACATTC---GAGTGAGT  46

seq1  ACATACTGAGTGTGTTTTAAGATGTCTGATCCATTGCTTTCAGCTGTCTA  98
      |||| |||||||| |||  |||   || || |||||| ||||||  ||||
seq2  ACAT-CTGAGTGT-TTTAGAGAGTCCTAATACATTGCCTTCAGCGCTCTA  94

seq1  CTAGGG-ATC-AATAATACTTGCTTCATTGGCTTGTTAAGGATGAAGGAA  146
      |||||| ||| |||||||  ||||||| |||| ||||||| |||||||||
seq2  CTAGGGAATCAAATAATATCTGCTTCA-TGGC-TGTTAAGAATGAAGGAA  142

seq1  AGACGACTCTGTAGCTACCACTGTCCAGTTCTTTTTCAAGTAATTGGATA  196
      || ||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  AGGCGACTCTGTAGCTACCACTGT-CAGTTC-TTTTCAAGTAATTGGATA  190

seq1  AGTTTTACTTTACTTACAGATAGACTTGTCATTGAGATTTACATATAGCC  246
      |||||||| ||||||||||| |||||||||||  ||||||||||||||||
seq2  AGTTTTAC-TTACTTACAGA-AGACTTGTCATGAAGATTTACATATAGCC  238

seq1  AACAGTTTCAAACCATATTTAATTTGACATAAAGCATATCAGCTTCCCTT  296
       |||| ||||||||||| ||||||||||||||||||||||||||| ||||
seq2  -ACAG-TTCAAACCATA-TTAATTTGACATAAAGCATATCAGCTT-CCTT  284

seq1  ATGAAGGAATGCTGACAGCCACTTGAAATAAGTATGGGATGCTTTGTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAATGCTGACAGCCACTTGAAATAAGTATGGGATGCTTTGTCTT  334

seq1  GTTAGAGATTTGAGGTTGCATAGAGCATCAATTCTGTGTTTTCCCTTATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGATTTGAGGTTGCATAGAGCATCAATTCTGTGTTTTCCCTTATC  384

seq1  AAAATAGCCATTTTAGAGTTGAGTTCCTCTTAAATGCAGGTTAAGTATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCATTTTAGAGTTGAGTTCCTCTTAAATGCAGGTTAAGTATAA  434

seq1  GCTCTTGGCATCGCAATGATTTTTGTCTTCTTCAGACTTTTATTTAATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGCATCGCAATGATTTTTGTCTTCTTCAGACTTTTATTTAATCA  484

seq1  TATCAATGTCAGTATATCACAGTGCTGAAAATTACTGGAAACAGAGTAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGTCAGTATATCACAGTGCTGAAAATTACTGGAAACAGAGTAAG  534

seq1  GGGGCTCTTGCTTAAGCCTGGTCATTCCTCACCATGAGGCTTTGGAAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTTGCTTAAGCCTGGTCATTCCTCACCATGAGGCTTTGGAAGTT  584

seq1  TATCTTTCATGTATTGCACTTTCGTAACATGTAAAATCGGGATAAAAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCATGTATTGCACTTTCGTAACATGTAAAATCGGGATAAAAGCA  634

seq1  GTACCAATCGTACGTTGTTATTGTGATAACAGAGAGACACACATGTGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATCGTACGTTGTTATTGTGATAACAGAGAGACACACATGTGTGG  684

seq1  TTGTTTTGCATATGATAAATAGTAAAGACAATTCATTTCTTTTTGGAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCATATGATAAATAGTAAAGACAATTCATTTCTTTTTGGAATC  734

seq1  TACCCAGAATTTTTGCTTTAAATTGTAGTAGCAGGGGCTGGCATAGGCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAATTTTTGCTTTAAATTGTAGTAGCAGGGGCTGGCATAGGCAG  784

seq1  GCAGAATCCTGGGTTTTGGCCATTTCTGTGACCTTATTTTTTGACTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCCTGGGTTTTGGCCATTTCTGTGACCTTATTTTTTGACTTTTT  834

seq1  TCCAGAACATTATTCACAAAACAGTTGTTTAAATAGGGTTCTCCGTGGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACATTATTCACAAAACAGTTGTTTAAATAGGGTTCTCCGTGGTG  884

seq1  TTTTGAGATTCTCTGGTGTATATTTTATCCTATTGCTCATCCTAAGTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATTCTCTGGTGTATATTTTATCCTATTGCTCATCCTAAGTATT  934

seq1  TTCAATGCTCTTAGATAGCTTCACAGTTGAATTTTTCTCTCATCTGTTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCTCTTAGATAGCTTCACAGTTGAATTTTTCTCTCATCTGTTGT  984

seq1  GGAGTTCACTAAAGATAGTGTATAGCTATAAATAAGCCTAACCATGTAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCACTAAAGATAGTGTATAGCTATAAATAAGCCTAACCATGTAGC  1034

seq1  TGTAACCATGGCAACCACCAGCCTTCAAAAGGGAAGAGTGGGGCTCACAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATGGCAACCACCAGCCTTCAAAAGGGAAGAGTGGGGCTCACAA  1084

seq1  GGCTAGTCTCAACTTTACAATAGCCCAATATGTCCGCTTTCAAGTTTGAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTCTCAACTTTACAATAGCCCAATATGTCCGCTTTCAAGTTTGAC  1134

seq1  AGCTCTGAATTGTGCTTGCACACAACCCAGTCATTCATTGCTCTCCACAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGAATTGTGCTTGCACACAACCCAGTCATTCATTGCTCTCCACAA  1184

seq1  AGTGCCTGTCATTGACTTCAATCTCACAGAATTC  1230
      ||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGTCATTGACTTCAATCTCACAGAATTC  1218