BAC Information

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BAC

Clone NameB6Ng01-078J02
ChromosomeY (Build37)3 (Build37)
Map Location 1,120,598 - 1,121,06967,363,841 - 67,364,930
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J02.bB6Ng01-078J02.g
ACCDH894229DH894230
length1,0131,092
definitionDH894229|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J02, 5' end.DH894230|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,598 - 1,121,069)(67,363,841 - 67,364,930)
sequence
gaattctttgtttagttctgtaccacatttttttttattaggaattttcc
tcgtttacattttcaatgctatcccaaaggtcccccatacccaccccccc
aatcctctacccacccactccccctttttggccctggcgttcccctgtac
tggggcatataaattttgcaagtccaatgggcctctctttgcagtgatgg
ccgactaggccatcttttgatacatatgcagctaaagacaagagctcccg
ggtactggttagtccatattgttgttccacctatagggttgcagttccct
atagctccttgggtaatttctctagctcctccattaggggccgtgtgacc
caaccaatagctgactgtgatcatccacttctgtgtttgctaggccccgg
catagtctcacaagagagagctataactgggtcctttcagcgaaatcttg
ctagtgtatgcaatggtgtcagcatttggaagctgattatgggatggatc
cctgcatatggcagtcactagatggtccatcctttcgtcacagctccaaa
ttttgtctctgtaactccttctatgggtgttttgttcccatttctaagaa
agggtaaagtgtccacactttggtcttcgttcttgaatttcatgcgtttg
gaaagttgtatcttatatcttgggtatcctaagtttctgggctattatcc
acttatcagtgagtacatattgtgcgagttcctttgtgattgggttactt
cactcaggatgataacatccaggtccatccatttgcctaggaatttcata
aattcatttttttaatagctgagtagtattccattgtgtaaatgtaccac
attttctgtatccattcctttgttgaggggcatctgggttctttccatct
tctggctattataacaagctgctatgaacatagtggagcatgtgttcttc
ttaccggttgggacatcttctggatattatgcccaggagaggtattgctg
gatcctcagtagt
gaattcagctgtcatgtttggtttttggccttctgcccctctgtctcccg
tagagccctcacagggctccctcacctaacctctcctgtcctgcagaacc
gcagagcagcactggagacagggagtgtactcagtaaaggagaactaact
gggtttggggagacataggtacagaggaagactatacaagacttaatgtt
ttgaccctgtgggatccggcacgagcctagcctccgtctgtgcacatctg
gtaggatatagtcttggaggtcacagttaagtcagtaaaatcctgaaggc
caattttgattctcaagtgcattggctatcgagaatttccagtggacttg
atggatcagagtaatgcagaagacaggacctccagccctgggtttttatg
gcatccataaaataccttttacagtttctgctcaattttatgctgttagg
ctaaacatttgacatcatatggcactttaagcacattgatgtatgggaag
tcagcaattgcatctgtaataaaaagtccaaagtatgggtttaaaaagta
atctactgtatttattattgacataaacagttacctgtagttcatttgag
caccatcttaggtttaactcatgtattaaagatactgtgcttcccatgca
gcaaggtcacagccaaggtgaaaactgtatgtggttggaaatgaaaaaaa
aatcaaatgtataatgataaatatgtaaaaagtgatatatatacacacac
atacacatatatgatttcatctctgtaaagcctccattaataataatatt
ctgtttattcccttttacctccacccttgatccccaaatcttcaagccta
gcttaccactaatctgttttccattgtcttgaattttgttctttgcagag
tgatatataagggggaatcatataaggttgcagccctttgagctttggcc
tccttattattttaaacctcagtattatccccggaggtcttgtaagtttt
gtgtgccttgctctcataactgtttcggtatcgtgtcacagtcaggctta
atattcgaactactaaaattacttccacccaacccagagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120598_1121069
seq2: B6Ng01-078J02.b_72_541

seq1  TTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAG  50
      |||||||||||| ||||  ||| ||||||||| ||||||||| ||||| |
seq2  TTTTTTATTAGGAATTTTCCTCGTTTACATTTTCAATGCTATCCCAAAGG  50

seq1  TCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTT  100
      ||||||||| |||||  |||||| ||| || |||||||||||||||||||
seq2  TCCCCCATACCCACC--CCCCCAATCCTCTACCCACCCACTCCCCCTTTT  98

seq1  TGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  150
      |||||||||  |||||||||||||||||||||||| ||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAATTTTGCAAGTCCAAT  148

seq1  GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATG  200
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACATATG  198

seq1  CAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCC  250
      |||||| || |||||||||| |||||||||||||  ||||  ||||||||
seq2  CAGCTAAAGACAAGAGCTCCCGGGTACTGGTTAGTCCATATTGTTGTTCC  248

seq1  ACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTC  300
      ||||||||||||| || ||||| ||||||||||| || ||||||||||||
seq2  ACCTATAGGGTTGCAGTTCCCTATAGCTCCTTGGGTAATTTCTCTAGCTC  298

seq1  CTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCAC  350
      ||||||| || ||| | ||| ||| ||| ||||||||||||| |||||||
seq2  CTCCATTAGGGGCCGTGTGACCCAACCAATAGCTGACTGTGATCATCCAC  348

seq1  TTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCT  400
      ||||||||||||| ||||||||||||||||||||||||| ||||| | ||
seq2  TTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGAGAGCTATAACT  398

seq1  GCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTG  450
      |  ||||||||   ||||||||||||||||||||||||||||||| ||||
seq2  GGGTCCTTTCAGCGAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTG  448

seq1  GATGCTGATTATGGGGTGGATC  472
      || |||||||||||| ||||||
seq2  GAAGCTGATTATGGGATGGATC  470

seq1: chr3_67363841_67364930
seq2: B6Ng01-078J02.g_69_1160

seq1  GAATTCAGCTGTCATGTTTGGTTTTTGGCCTTCTGCCCCTCTGTCTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTCATGTTTGGTTTTTGGCCTTCTGCCCCTCTGTCTCCCG  50

seq1  TAGAGCCCTCACAGGGCTCCCTCACCTAACCTCTCCTGTCCTGCAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCTCACAGGGCTCCCTCACCTAACCTCTCCTGTCCTGCAGAACC  100

seq1  GCAGAGCAGCACTGGAGACAGGGAGTGTACTCAGTAAAGGAGAACTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGCACTGGAGACAGGGAGTGTACTCAGTAAAGGAGAACTAACT  150

seq1  GGGTTTGGGGAGACATAGGTACAGAGGAAGACTATACAAGACTTAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGGGAGACATAGGTACAGAGGAAGACTATACAAGACTTAATGTT  200

seq1  TTGACCCTGTGGGATCCGGCACGAGCCTAGCCTCCGTCTGTGCACATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTGTGGGATCCGGCACGAGCCTAGCCTCCGTCTGTGCACATCTG  250

seq1  GTAGGATATAGTCTTGGAGGTCACAGTTAAGTCAGTAAAATCCTGAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATATAGTCTTGGAGGTCACAGTTAAGTCAGTAAAATCCTGAAGGC  300

seq1  CAATTTTGATTCTCAAGTGCATTGGCTATCGAGAATTTCCAGTGGACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGATTCTCAAGTGCATTGGCTATCGAGAATTTCCAGTGGACTTG  350

seq1  ATGGATCAGAGTAATGCAGAAGACAGGACCTCCAGCCCTGGGTTTTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAGAGTAATGCAGAAGACAGGACCTCCAGCCCTGGGTTTTTATG  400

seq1  GCATCCATAAAATACCTTTTACAGTTTCTGCTCAATTTTATGCTGTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATAAAATACCTTTTACAGTTTCTGCTCAATTTTATGCTGTTAGG  450

seq1  CTAAACATTTGACATCATATGGCACTTTAAGCACATTGATGTATGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATTTGACATCATATGGCACTTTAAGCACATTGATGTATGGGAAG  500

seq1  TCAGCAATTGCATCTGTAATAAAAAGTCCAAAGTATGGGTTTAAAAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATTGCATCTGTAATAAAAAGTCCAAAGTATGGGTTTAAAAAGTA  550

seq1  ATCTACTGTATTTATTATTGACATAAACAGTTACCTGTAGTTCATTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGTATTTATTATTGACATAAACAGTTACCTGTAGTTCATTTGAG  600

seq1  CACCATCTTAGGTTTAACTCATGTATTAAAGATACTGTGCTTCCCATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTTAGGTTTAACTCATGTATTAAAGATACTGTGCTTCCCATGCA  650

seq1  GCAAGGTCACAGCCAAGGTGAAAACTGTATGTGGTTGGAAATGAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCACAGCCAAGGTGAAAACTGTATGTGGTTGGAAATGAAAAAAA  700

seq1  AATCAAATGTATAATGATAAATATGTAAAAAGTGATATATATACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATGTATAATGATAAATATGTAAAAAGTGATATATATACACACAC  750

seq1  ATACACATATATGATTTCATCTCTGTAAAGCCTCCATTAATAATAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATATGATTTCATCTCTGTAAAGCCTCCATTAATAATAATATT  800

seq1  CTGTTTATT-CCTTTTACCTCCACCCTTGATCCCCAAATCTTCAAGCCTA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTCCCTTTTACCTCCACCCTTGATCCCCAAATCTTCAAGCCTA  850

seq1  GCTAACCACTAATCTGTTTTCCA-TGTCTTGAATTTTGTTCTTTGCAGAG  898
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTTACCACTAATCTGTTTTCCATTGTCTTGAATTTTGTTCTTTGCAGAG  900

seq1  TGATATATAA-GTGGAATCATAT-AGGTTGCAG-CCTTTGAGC-TTGGCC  944
      |||||||||| | |||||||||| ||||||||| ||||||||| ||||||
seq2  TGATATATAAGGGGGAATCATATAAGGTTGCAGCCCTTTGAGCTTTGGCC  950

seq1  TCCTTATTATTTTAAA-CTCAGTATAATTCCCCGGAGGTCTGTTAAGTTT  993
      |||||||||||||||| |||||||| | |||||||||||||  |||||||
seq2  TCCTTATTATTTTAAACCTCAGTATTA-TCCCCGGAGGTCTTGTAAGTTT  999

seq1  TGTGTGGCTTG-TCTCATAACCTGTTTCGGTATCGTGGTCACAGTCAGGG  1042
      |||||| |||| |||||||| ||||||||||||||| |||||||||| ||
seq2  TGTGTGCCTTGCTCTCATAA-CTGTTTCGGTATCGT-GTCACAGTCA-GG  1046

seq1  CTGAATAATCGAACTAACTTAAAATTACTTCCACCCAACCCAGAGCAC  1090
      || |||| ||||||||   |||||||||||||||||||||||||||||
seq2  CTTAATATTCGAACTA--CTAAAATTACTTCCACCCAACCCAGAGCAC  1092