BAC Information

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BAC

Clone NameB6Ng01-081O21
ChromosomeY (Build37)
Map Location 2,420,771 - 2,589,878
singlet/doubletdoublet
Overlap geneLOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Upstream geneZfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O21.bB6Ng01-081O21.g
ACCDH896636DH896637
length1,0911,062
definitionDH896636|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O21, 5' end.DH896637|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(2,588,790 - 2,589,878)(2,420,771 - 2,421,821)
sequence
gaattcagttttgcactgtgccatagaaagaaagaagcaaagagcagtcc
taaaaaagaaactgacttaatataaaattaacactgggtcaatgaaaaac
tgttgaatgtacagaattttgtatatatatcacttagccttaaatatatg
gaagtgtaaaaaatgtttacatctatttttttcctctaaaaatcactaaa
aagcagttaagaagatgccccagtagtaaaaaaaaaagtgtttactgtaa
aaggagtaagtttgaaagtttgaatctagtacccatctacaaaatcagtc
atggatggttgcttctacaatagcagcactgtgataggcagagtgagaat
tgttaggaattgctggctgtttgtctagctgcatgattagtgaaagagcc
tgtcttaagggaataaggttgaatgtaatagagcaacacctcctctgccc
ttcacatgtgtatatatgcaccacagacacaaacatacaaaaaaataaaa
attaagtttcattaatgtcacaactgttcaaaaagcacaattttcacttt
ctgtaccacaggacaaaataagtccacaattctaaatcaaaaatatttgc
aagagtctgtgtcatgaatagaccttgggtgctgactctgcacctagtcc
cacaacacccagaagaagctcaactcccaggtgctctaccactcccagga
tcacaggaaaggccccaacatcaggagtagctgaggccccaaggatccaa
ggacacaggaactcctgcttggccagtggcatggatttcttccagtctga
acctgcacctggagcagacctggggcgctggctctgcacccactcttaaa
acacccagagggagcccaactccaaggtattctgaaatagccaagatcac
aggatcacagaggagctcaaatcccaggagatcagacacaccaaggaaca
gtggagttctgacagaagatcacgcctgagggcacaacatctttccaaca
caactgttgttaactggggaaacccccaagaaccaaagaaacaaaaaaca
ccttctcagccagaggcattggtctttgcaacttgcaaatg
gaattcttattcttggacctggagcttcttgttcctttgtctgcctccct
ctggtgtttgattgaggacattgcagtcctttccgattctttttatgcta
agccagaggctgactgttgaaagacccttggcttctgtacatctgagctt
tagcgtgtcttttgtctgggctgctgcctgcagcttgtgtaccaccgatc
tcaggcagcctacaagaaaagaagtagtcgggagaaggggtctggctgca
cagtgtcctacacaaacttggggataaggaaaatgagcaagagaagcctg
aagcctgactaggggcagagatgcccagatcagacccctatgcctgtgag
aaggattggaaatttagctgcatattttacagctgttgatcctcagctgt
gaaggctgcatctcaggcagccggccccagtgtccctggtctttctctca
gccccaggcaaccccagactgtgtttgtggcattggcaccacctcatgtc
ttggtcctgcctcctattggagcataggcagtggggagggagcctcacag
ttatctctctgtacacctcttagacccactccacactttatttccaccgt
ctgcagctttagagcacaaccctagtttgtttatattcaggagtgtggga
ggcttttatctcaggttagctcagttctaagccagacatttagtgtgcca
atttgttacagaccttttgtcatcctactaagattgcatacaagacacac
aatctagatactttcattgtaaaccatatgctttagactgagcagatcta
ggactatactagcttattccactgctctatttatttgctgtttttatttt
gctgtttctcctgaccacgtgtttctgttccatgggggcttcccccctac
tctgtcttcttcttcctcttcctctccatatctctctctatctgccagcc
tctttggaagcctccaatccctcctttccattccactggcccaaggaata
aggctctatctagtgttccgttgtcccagtaaatggggagaaaatgggta
aacacttgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2588790_2589878
seq2: B6Ng01-081O21.b_48_1138 (reverse)

seq1  CATTTGCAAGTAGCAAAGAACCCATGCCTCTGGCTGAGAAGGTG-TTTTT  49
      ||||||||||| |||||| ||| ||||||||||||||||||||| |||||
seq2  CATTTGCAAGTTGCAAAG-ACCAATGCCTCTGGCTGAGAAGGTGTTTTTT  49

seq1  GTTTCCTTGGTTCTTGTGGGTTT-CCCAGTTA--CACAG-TGTGTTGGGA  95
      ||||| |||||||||| |||||| ||||||||   |||| |||||| |||
seq2  GTTTCTTTGGTTCTTGGGGGTTTCCCCAGTTAACAACAGTTGTGTT-GGA  98

seq1  AAGATGTTGTGCCCTCAGGCGTGATCTTCTGTCAGAACTCCACTGTTCCT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGTGCCCTCAGGCGTGATCTTCTGTCAGAACTCCACTGTTCCT  148

seq1  TGGTGTGTCTGATCTCCTGGGATTTGAGCCTCCTCTGTGATCCTGTGATC  195
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGTGTGTCTGATCTCCTGGGATTTGAG-CTCCTCTGTGATCCTGTGATC  197

seq1  TTGGCTATTTCAGAATACCTTGGAGTTGGGCTCCCTCTGGGTGTTTTAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATTTCAGAATACCTTGGAGTTGGGCTCCCTCTGGGTGTTTTAAG  247

seq1  AGTGGGTGCAGAGCCAGCGCCCCAGGTCTGCTCCAGGTGCAGGTTCAGAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGCAGAGCCAGCGCCCCAGGTCTGCTCCAGGTGCAGGTTCAGAC  297

seq1  TGGAAGAAATCCATGCCACTGGCCAAGCAGGAGTTCCTGTGTCCTTGGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAATCCATGCCACTGGCCAAGCAGGAGTTCCTGTGTCCTTGGAT  347

seq1  CCTTGGGGCCTCAGCTACTCCTGATGTTGGGGCCTTTCCTGTGATCCTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGCCTCAGCTACTCCTGATGTTGGGGCCTTTCCTGTGATCCTGG  397

seq1  GAGTGGTAGAGCACCTGGGAGTTGAGCTTCTTCTGGGTGTTGTGGGACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTAGAGCACCTGGGAGTTGAGCTTCTTCTGGGTGTTGTGGGACTA  447

seq1  GGTGCAGAGTCAGCACCCAAGGTCTATTCATGACACAGACTCTTGCAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGAGTCAGCACCCAAGGTCTATTCATGACACAGACTCTTGCAAAT  497

seq1  ATTTTTGATTTAGAATTGTGGACTTATTTTGTCCTGTGGTACAGAAAGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATTTAGAATTGTGGACTTATTTTGTCCTGTGGTACAGAAAGTG  547

seq1  AAAATTGTGCTTTTTGAACAGTTGTGACATTAATGAAACTTAATTTTTAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTGCTTTTTGAACAGTTGTGACATTAATGAAACTTAATTTTTAT  597

seq1  TTTTTTGTATGTTTGTGTCTGTGGTGCATATATACACATGTGAAGGGCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTATGTTTGTGTCTGTGGTGCATATATACACATGTGAAGGGCAG  647

seq1  AGGAGGTGTTGCTCTATTACATTCAACCTTATTCCCTTAAGACAGGCTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGTTGCTCTATTACATTCAACCTTATTCCCTTAAGACAGGCTCT  697

seq1  TTCACTAATCATGCAGCTAGACAAACAGCCAGCAATTCCTAACAATTCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAATCATGCAGCTAGACAAACAGCCAGCAATTCCTAACAATTCTC  747

seq1  ACTCTGCCTATCACAGTGCTGCTATTGTAGAAGCAACCATCCATGACTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTATCACAGTGCTGCTATTGTAGAAGCAACCATCCATGACTGA  797

seq1  TTTTGTAGATGGGTACTAGATTCAAACTTTCAAACTTACTCCTTTTACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGATGGGTACTAGATTCAAACTTTCAAACTTACTCCTTTTACAG  847

seq1  TAAACACTTTTTTTTTTACTACTGGGGCATCTTCTTAACTGCTTTTTAGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTTTTTTTTTTACTACTGGGGCATCTTCTTAACTGCTTTTTAGT  897

seq1  GATTTTTAGAGGAAAAAAATAGATGTAAACATTTTTTACACTTCCATATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAGAGGAAAAAAATAGATGTAAACATTTTTTACACTTCCATATA  947

seq1  TTTAAGGCTAAGTGATATATATACAAAATTCTGTACATTCAACAGTTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCTAAGTGATATATATACAAAATTCTGTACATTCAACAGTTTTT  997

seq1  CATTGACCCAGTGTTAATTTTATATTAAGTCAGTTTCTTTTTTAGGACTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACCCAGTGTTAATTTTATATTAAGTCAGTTTCTTTTTTAGGACTG  1047

seq1  CTCTTTGCTTCTTTCTTTCTATGGCACAGTGCAAAACTGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTTCTTTCTTTCTATGGCACAGTGCAAAACTGAATTC  1091

seq1: chrY_2420771_2421821
seq2: B6Ng01-081O21.g_69_1130

seq1  GAATTCTTATTCTTGGACCTGGAGCTTCTTGTTCCTTTGTCTGCCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTCTTGGACCTGGAGCTTCTTGTTCCTTTGTCTGCCTCCCT  50

seq1  CTGGTGTTTGATTGAGGACATTGCAGTCCTTTCCGATTCTTTTTATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTGATTGAGGACATTGCAGTCCTTTCCGATTCTTTTTATGCTA  100

seq1  AGCCAGAGGCTGACTGTTGAAAGACCCTTGGCTTCTGTACATCTGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGCTGACTGTTGAAAGACCCTTGGCTTCTGTACATCTGAGCTT  150

seq1  TAGCGTGTCTTTTGTCTGGGCTGCTGCCTGCAGCTTGTGTACCACCGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTGTCTTTTGTCTGGGCTGCTGCCTGCAGCTTGTGTACCACCGATC  200

seq1  TCAGGCAGCCTACAAGAAAAGAAGTAGTCGGGAGAAGGGGTCTGGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGCCTACAAGAAAAGAAGTAGTCGGGAGAAGGGGTCTGGCTGCA  250

seq1  CAGTGTCCTACACAAACTTGGGGATAAGGAAAATGAGCAAGAGAAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTACACAAACTTGGGGATAAGGAAAATGAGCAAGAGAAGCCTG  300

seq1  AAGCCTGACTAGGGGCAGAGATGCCCAGATCAGACCCCTATGCCTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGACTAGGGGCAGAGATGCCCAGATCAGACCCCTATGCCTGTGAG  350

seq1  AAGGATTGGAAATTTAGCTGCATATTTTACAGCTGTTGATCCTCAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGAAATTTAGCTGCATATTTTACAGCTGTTGATCCTCAGCTGT  400

seq1  GAAGGCTGCATCTCAGGCAGCCGGCCCCAGTGTCCCTGGTCTTTCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGCATCTCAGGCAGCCGGCCCCAGTGTCCCTGGTCTTTCTCTCA  450

seq1  GCCCCAGGCAACCCCAGACTGTGTTTGTGGCATTGGCACCACCTCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCAACCCCAGACTGTGTTTGTGGCATTGGCACCACCTCATGTC  500

seq1  TTGGTCCTGCCTCCTATTGGAGCATAGGCAGTGGGGAGGGAGCCTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGCCTCCTATTGGAGCATAGGCAGTGGGGAGGGAGCCTCACAG  550

seq1  TTATCTCTCTGTACACCTCTTAGACCCACTCCACACTTTATTTCCACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCTGTACACCTCTTAGACCCACTCCACACTTTATTTCCACCGT  600

seq1  CTGCAGCTTTAGAGCACAACCCTAG-TTGTTTATATTCAGGAGTGTGGGA  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGCAGCTTTAGAGCACAACCCTAGTTTGTTTATATTCAGGAGTGTGGGA  650

seq1  GGCTTTTATCTCAGGTTAGCTCAGTTCTAAGCCAGACATTTAGTGTGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTATCTCAGGTTAGCTCAGTTCTAAGCCAGACATTTAGTGTGCCA  700

seq1  ATTTGTTACAGACC-TTTGTCATCCTACTAAGATTGCATACAAGACACAC  748
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTGTTACAGACCTTTTGTCATCCTACTAAGATTGCATACAAGACACAC  750

seq1  AATCTAGATACTTTCATTGTAAACCATATGC-TTAGACTGAGCAGATCTA  797
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATCTAGATACTTTCATTGTAAACCATATGCTTTAGACTGAGCAGATCTA  800

seq1  GGACTATACTAGCTTATTCCACTGCTCTATTTATTTGCTGTTTTTA-TTT  846
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGACTATACTAGCTTATTCCACTGCTCTATTTATTTGCTGTTTTTATTTT  850

seq1  GCTGTTTCTCCTGACCACGTGTTTCTGTTCCATGGGGGCTT-CCCCCTAC  895
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGTTTCTCCTGACCACGTGTTTCTGTTCCATGGGGGCTTCCCCCCTAC  900

seq1  TCTGTCTTCTTCTTCTTCTTCTCTTCCATATCTCTCTCTATCTGCAAGCC  945
      ||||||||||||||| |||||   ||||||||||||||||||||| ||||
seq2  TCTGTCTTCTTCTTCCTCTTCCTCTCCATATCTCTCTCTATCTGCCAGCC  950

seq1  TCTTTGG-AGCCTCCAATCCCTCCTTTCCATTCCACT-GCCCAAGCA--T  991
      ||||||| ||||||||||||||||||||||||||||| ||||||| |   
seq2  TCTTTGGAAGCCTCCAATCCCTCCTTTCCATTCCACTGGCCCAAGGAATA  1000

seq1  AGGCTCTATCTAGTGTTCCGTTGT-CCAGTTAAAATGGGGAG-AAATGG-  1038
      |||||||||||||||||||||||| |||||  |||||||||| |||||| 
seq2  AGGCTCTATCTAGTGTTCCGTTGTCCCAGT--AAATGGGGAGAAAATGGG  1048

seq1  -TAACACTTGAGTA  1051
        ||||||||||||
seq2  TAAACACTTGAGTA  1062