BAC Information

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BAC

Clone NameB6Ng01-082B11
ChromosomeY (Build37)X (Build37)
Map Location 1,120,599 - 1,121,06244,717,033 - 44,718,145
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082B11.bB6Ng01-082B11.g
ACCDH896750DH896751
length1,0561,099
definitionDH896750|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B11, 5' end.DH896751|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,599 - 1,121,062)(44,717,033 - 44,718,145)
sequence
gaattctttgtttagttctgtaccccatttttaaaatatatttttattag
gcattttcctcatttacatttccaatgctatcccagaagtcccccatacc
cttcccccactcccctatccacccactcccactttttggccctggcattc
ccctgtactggggcatataaagtttgcaagtccaatgggcctctctttcc
agtgatggccgactaggccatcttttgatacatatgcagctagagtcaag
agctcaggggtactggttagttcatattgttgttcttcctatagagttgc
agaccccttcagctccttgggtactttctcttgctcctccattgggaacc
tgtgatccatccaatagctgactgtgagcatccacttctgtgtatgctag
gccccggcatagcctcacaagagagagctctatctgggtcctttcagcaa
aatcttcctagtgtgtgcaatggtgtcagcgtttggaagctgattatggg
agggatccccggatatggaggtctctagatggtctatcctttcgtcatag
ctccaaacattgtctctgtaactttttccatgggtgttttgttcccaatt
ctaagacggggcacagtgtccacactttggtcttcgttcttcttgagttt
catgtgtttagcaaattgtatcttatatcttgggtatcctaagtttctgg
gctaatatccacatatcagtgagtacatattgtgtgagttcctttgtgac
tgggttacctcactgaagatgatgccctccaggtccatccatttgcctag
gaatttcataaattcattctttttaatagctgagtagtactccattgtgt
aaatgtaccacattttctgtatccattcctctgttgaggggcatctgggt
tctttccagcttctggctattataaataagctgctatgaacatagtggag
catgtgtccttcttaccagttgggacatcttctggacatatgcccaggag
aggtatatgggatcctctggtattactacgtccaattttctgagaaccgc
aactga
gaattcttgccttgcccattggcctcctgtctcattatgtgacttatccc
ttcaccacaagtgcctgtcagaaaaccatctaatatggtattctcatcaa
agccaaacagaaacttgtatcgtcctcctgatgttcaaaaatttataagt
caaataaaaataccttttattaattactcagtttcatgcacttccttaga
acaatagaaaataagcttacagggggatttacaagtaactttgagaaagt
tgccaaatttataatgataaatccattagtaataaggaccacctacactt
aagtattacacactttttaaaagcagacattaaagggataataatgattg
aataaatactgaataagaaacacatctcttatgcagatgatttcaaataa
attatgtagatactaaacccttaagatagtctccattccttaaacatgag
ttgtgcatagtgatttcattccaaagaaaacccagctttcaacttgtaat
ttacgtgaagaaattatatttcggttatgatggtggagaaacctcatcat
cattttaaccaggctgtcaacttcaatctcactttatcagtgataagtga
tatttataccaatatgaactgttgatactgtgtgatgaaatccagatcaa
ccaatgagaaaatgctgggcactcccagccaaaggcctatctaccaaatg
tctgactaatatttctcagaactataaaggttatcaaaatgattatgaaa
attcttagaaatagtcacgaatgtgagcaagctaagaaaacatgtgtatt
aattatgatatggtacttggatgaggtccttaaacaaaaagaacattgag
gaaaactgtaacttgagtaaagtaatgtaatttggttcaaataccttagc
aataattcattgttatgaaaacagggatggggagatggtttcacagttaa
aagcatgggttctctttctagcactacatgcttgctcacacgatctgctg
actctgcagacattgcacacatgtggtacatatgcacagcaaagcatcta
tgcataaatattaatatgtaacaaaaacatgactatgactgtatattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120599_1121062
seq2: B6Ng01-082B11.b_88_547

seq1  TTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGT  50
      ||||||||||| ||||  ||||||||||||||||||||||| ||| ||||
seq2  TTTTTATTAGGCATTTTCCTCATTTACATTTCCAATGCTATCCCAGAAGT  50

seq1  CCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTT  100
      ||||||||    ||  |||||||||||||  |||||||||||| ||||||
seq2  CCCCCATA---CCCTTCCCCCACTCCCCTATCCACCCACTCCCACTTTTT  97

seq1  GGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATG  147

seq1  GGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGC  197

seq1  AGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCA  250
      |||||||||||||||||| |||||||||||||| |||||  |||||||  
seq2  AGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATATTGTTGTTCTT  247

seq1  CCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCC  300
      ||||||| |||| ||| ||||| |||||||||| |||||||||| |||||
seq2  CCTATAGAGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTTGCTCC  297

seq1  TCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACT  350
      ||||||||||  ||| ||||||||||| ||||||||||||||||||||||
seq2  TCCATTGGGA-ACCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACT  346

seq1  TCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTG  400
      ||||||| |||| ||||||||||||| ||||||||||| ||||  |||||
seq2  TCTGTGTATGCTAGGCCCCGGCATAGCCTCACAAGAGAGAGCTCTATCTG  396

seq1  CCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGG  450
        ||||||||  |||||||| ||||||| |||||||||||||||||||||
seq2  GGTCCTTTCAGCAAAATCTTCCTAGTGTGTGCAATGGTGTCAGCGTTTGG  446

seq1  ATGCTGATTATGGG  464
      | ||||||||||||
seq2  AAGCTGATTATGGG  460

seq1: chrX_44717033_44718145
seq2: B6Ng01-082B11.g_68_1166

seq1  GAATTCTTGCCTTGCCCATTGGCCTCCTGTCTCATTATGTGACTTATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTTGCCCATTGGCCTCCTGTCTCATTATGTGACTTATCCC  50

seq1  TTCACCACAAGTGCCTGTCAGAAAACCATCTAATATGGTATTCTCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACAAGTGCCTGTCAGAAAACCATCTAATATGGTATTCTCATCAA  100

seq1  AGCCAAACAGAAACTTGTATCGTCCTCCTGATGTTCAAAAATTTATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACAGAAACTTGTATCGTCCTCCTGATGTTCAAAAATTTATAAGT  150

seq1  CAAATAAAAATACCTTTTATTAATTACTCAGTTTCATGCACTTCCTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAATACCTTTTATTAATTACTCAGTTTCATGCACTTCCTTAGA  200

seq1  ACAATAGAAAATAAGCTTACAGGGGGATTTACAAGTAACTTTGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAAAATAAGCTTACAGGGGGATTTACAAGTAACTTTGAGAAAGT  250

seq1  TGCCAAATTTATAATGATAAATCCATTAGTAATAAGGACCACCTACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATTTATAATGATAAATCCATTAGTAATAAGGACCACCTACACTT  300

seq1  AAGTATTACACACTTTTTAAAAGCAGACATTAAAGGGATAATAATGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTACACACTTTTTAAAAGCAGACATTAAAGGGATAATAATGATTG  350

seq1  AATAAATACTGAATAAGAAACACATCTCTTATGCAGATGATTTCAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACTGAATAAGAAACACATCTCTTATGCAGATGATTTCAAATAA  400

seq1  ATTATGTAGATACTAAACCCTTAAGATAGTCTCCATTCCTTAAACATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAGATACTAAACCCTTAAGATAGTCTCCATTCCTTAAACATGAG  450

seq1  TTGTGCATAGTGATTTCATTCCAAAGAAAACCCAGCTTTCAACTTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATAGTGATTTCATTCCAAAGAAAACCCAGCTTTCAACTTGTAAT  500

seq1  TTACGTGAAGAAATTATATTTCGGTTATGATGGTGGAGAAACCTCATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGAAGAAATTATATTTCGGTTATGATGGTGGAGAAACCTCATCAT  550

seq1  CATTTTAACCAGGCTGTCAACTTCAATCTCACTTTATCAGTGATAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACCAGGCTGTCAACTTCAATCTCACTTTATCAGTGATAAGTGA  600

seq1  TATTTATACCAATATGAACTGTTGATACTGTGTGATGAAATCCAGATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATACCAATATGAACTGTTGATACTGTGTGATGAAATCCAGATCAA  650

seq1  CCAATGAGAAAATGCTGGGCACTCCCAGCCAAAGGCCTATCTACCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGAAAATGCTGGGCACTCCCAGCCAAAGGCCTATCTACCAAATG  700

seq1  TCTGACTAATATTTCTCAGAACTATAAAGGTTATCAAAATGATTATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTAATATTTCTCAGAACTATAAAGGTTATCAAAATGATTATGAAA  750

seq1  ATTCTTAGAAATAGTCACGAATGTGAGCAAGCTAAGAAAACATGTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGAAATAGTCACGAATGTGAGCAAGCTAAGAAAACATGTGTATT  800

seq1  AATTATGATATGGTACTTGGATGAGGTCCTTAAACAAAAAGAACATTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGATATGGTACTTGGATGAGGTCCTTAAACAAAAAGAACATTGAG  850

seq1  GAAAACTGTAAACTTGAGTAAAGTAATGTAATTTGGTTCAAAATACCTTA  900
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GAAAACTGT-AACTTGAGTAAAGTAATGTAATTTGGTTC-AAATACCTTA  898

seq1  GCAATAATTCATTGTTTATGAAAACAGGGGATGGGGAGATGGTTCCACAG  950
      |||||||||||||| ||||||||||| ||||||||||||||||| |||||
seq2  GCAATAATTCATTG-TTATGAAAACA-GGGATGGGGAGATGGTTTCACAG  946

seq1  TTAAAAGCATGGGTTCTCTTTCTAGCACCTACATGCTTGCTCACAACGAT  1000
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TTAAAAGCATGGGTTCTCTTTCTAGCA-CTACATGCTTGCTCAC-ACGAT  994

seq1  CTGCTGACTTCTGCAGACATTGCACACATGTGGTACATATGCACAGGCAA  1050
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  CTGCTGAC-TCTGCAGACATTGCACACATGTGGTACATATGCACA-GCAA  1042

seq1  AGCATTCATATGCATAAAATATAATATGTAAACAAAAACATGACTAATGA  1100
      |||||   ||||||||||   |||||||| ||||||||||||||| ||| 
seq2  AGCAT--CTATGCATAAATATTAATATGT-AACAAAAACATGACT-ATG-  1087

seq1  ACTGTAATATTGT  1113
      ||||| |||||||
seq2  ACTGT-ATATTGT  1099