BAC Information

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BAC

Clone NameB6Ng01-082I06
ChromosomeY (Build37)
Map Location 1,870,351 - 1,870,573
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082I06.bB6Ng01-082I06.g
ACCDH897046DH897047
length1,245436
definitionDH897046|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I06, 5' end.DH897047|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatctctttgctcaatccttcctactattcttccattagagtc
cccaagctcaatccactgtttggctgtaggtgtctgtttttgtctgagtc
acttcctaagtggagcccctcagaggacaatatgctcctgtctgcaacaa
taacagagaattaaaagtctcaggtattggtgttaaatcaacaggatggg
tctcaaattgggtcggttattggttagccattccttcagattctgctcca
tcacctttggctgcatttattgtagactgttgtatatagccctggggaaa
attatatttgatgttaattttgttctcatgtaagtggttgtgaagaagga
atgagtcagtcacctgcttcccaccttaatttgtaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaggagagctgcccttacagtcagcaccagct
cctgactaccttggacatgaactcggacaacagttccacatttcccagag
gactctacagaagaccttaggatcactggtgagtggaacacaacatctgt
tccaaaccaatcgtgacagcagcagggatgcagtaaacccacctgagctc
aagtcccttccagtcagccaccttgggcacaaattcagctaacagtccca
tggtcccagatgactctccatgccccaggcaccctagcactcctagaatc
ttagtatcactggtgagtggaacacaacatcttttccaatccaatcatga
caggcctctgacagcaggagcaagaacatgggaggcctgcctgaccagca
gatcatgtttcttctgatcagtgttggtattccttggtttcaaacacacc
agacagacctatgggtccccagaggagacagcaattctaggagctgtaaa
gatcccagaaccttaggattcaagataccaggatcttggtcacacagtat
ttcaagtcctcagaagaagctttgtggggagccgccctcccattcgccgt
accaggatggcgctgacatctggtgttctagtggtaaacaataatctggg
catgtgcaagggtagttctcacccatggtgctctgctcccgtgaggaaca
cccggcggtggctgcagccaatccggagtgaatgtcttaggcggagagat
tattctcttaggacggtcgcatctctctgcatgctggaccttgtctctgg
catgactcaagatgaggacatagagccttggtctctcttgactcg
attgctataggaagggacattttgaacagtcactgacacccaaggcaaga
acaacaattaataaataagatttcctgaaaatcaatagcttcttcacaac
aaatgacaacatcatttggacaatgcaacaggatacagaacgaaaaaaaa
aaaaaagagagttttatcggctacatatcctatgaaggtctaagatccta
aatatgtaaacaactcaagaacctagacatcaagaaggtcaatggaggag
ctagggaaagtactcaaggagctgaagggatctgcaatcctataggtgca
acaacaatatgaatcagaagatggcctagtcagccatcagtggaaagaga
ggcccattggttgtgcaaactttatatgactcagtacaggggaacgccag
ggccaagaattgggagtgagtgggtaggggagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870351_1870573
seq2: B6Ng01-082I06.g_330_510

seq1  GAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAAC  50
      |||||||| ||||||||| ||||||||||||| |||||||||| ||||||
seq2  GAAAGTACTCAAGGAGCTGAAGGGATCTGCAATCCTATAGGTGCAACAAC  50

seq1  ATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCATAGGTA  100
      | |||||                                          |
seq2  AATATGA------------------------------------------A  58

seq1  TCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACA  150
      ||| |||||||||||||| ||||||| ||||||||||||||||||||   
seq2  TCAGAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCCATTGGTTG  108

seq1  TGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGG  200
      ||||||||||||||| | ||||||||||||||||||||||||| ||  ||
seq2  TGCAAACTTTATATGACTCAGTACAGGGGAACGCCAGGGCCAAGAATTGG  158

seq1  CAGTGGGTGGGTAGGGGAGTGGG  223
       |||| |||||||||||||||||
seq2  GAGTGAGTGGGTAGGGGAGTGGG  181