BAC Information

Click to search

BAC

Clone NameB6Ng01-083M04
ChromosomeY (Build37)15 (Build37)
Map Location 573,826 - 574,09256,675,921 - 56,677,029
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083M04.bB6Ng01-083M04.g
ACCDH897931DH897932
length9831,107
definitionDH897931|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M04, 5' end.DH897932|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,826 - 574,092)(56,675,921 - 56,677,029)
sequence
gaattcattttttttttttccgaggcagggtttctctgtgtagtcctggc
tgtcctggaactcactctgtagatcaggctggccttgaactcagaaatcc
gcctgactctgcttcccaagggctgggactaaaggcgtgagccaccacac
ccagctcaaattcattctttttaatagctgagtagtactccattgtgtaa
atgtacacattttctgtatccattcctctgttgaggggcatctgggttct
ttccagcttctggctattataaataaggctgctatgaacatagtggagca
tgtgtttttcttatcagttggaacatcttctggatatatgcccaggagag
gtattgggggatcctccagtagtactatgtccaattttctgaggaactgc
cagactgatttcaagagtggttgtacaagcttgcaatcccaccagcaatg
gaggagtgtttctctttctccacacccttgccagcatctgctgtcacctg
aatttttgatcttagccattctgactggtgtgagatggaatctcagggct
gttttgatttgcatttccctgatgattaaggatgctgaacattttttcag
gtgattctcagccattcagtattcctccggtgagaattctttgtttagct
ctgagccccattttttaatggggttatctgattttctggagtcacccttc
ttcagtatttttatatatactagatattagtcccctgtctgatttaggat
aggtaaagatcctttccaggtctgttggttgcctttttgtcttattgaca
atgtcctttgccttacagaagctttgcaattttatgagatcccatttgtc
aattctcaatcttacagcacaagccattgctattctattcagaaattttc
ccctgtgcccatgtcttcgaggctattccccactttctctctataagttt
caatgtctctggctttatgtggagttccttgat
gaattcaaggacctaccctcctctttgacagagatagcaagtgcctcatc
tcataatcagaaaaacatggtcactagagcagggatatcagcaaacaact
ttgtctgcaggctcctctggacacagcatgcataagaaacccaagtgtca
cttcttattgttctatttgagatgtcaaagacatgtcagattgcattatt
tatttctaagtagagaaatttgactctatcttctacgtattcctctgtga
gaaccagtttaatctctgaataaacaagaaacttatatgaggaaattact
ttcaagtgagtaaatgtttgtctgactggaagtctctctttctactggct
tccctcaagtctacaggcacaggcttagtggtgggaggaagtgttttaag
caaaattcctgtggtcattttttccattttcaagcaatgggtcacttagt
atgcctggagatttgccaagtagtttacttttctgcatcatttaagctaa
ttctttgtaagacatatttcctgcccaattgggaaaatggacaaagaatg
aagaagaaggaaaaaaaaaaaaacagacaaaatggaataaaaccatggca
actgattgaaagccattatgtagaatacagttaaggaataggtataataa
aagagaatgatagaattatgtatagttctttctgcatagtttaccattaa
ttcctttgaaatatgtgtataaaatcagttaaaagttgtatattaattag
tagaagcagaatgtaagctattacttttcctttaatttagtgtcacatat
tttaaatattggaaaggtgttttgggaaagtctttttgaaactcaaataa
gtctagttttatatcataatatatatatatatatatatatatatatatat
atatatgcagttaaaggagtttcctattttcagaggctgtgttttcaggt
taatttatgtttcattactcattgcttagtgcttttccttgatagatctg
ttgattctctttccttacttaccaatgatcaatcagcctgctttattctt
aggtgggaataagaaacaacattccaaagttgggatcttctgaaatgagg
aaaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573826_574092
seq2: B6Ng01-083M04.b_52_191

seq1  TTTTTTTTTTTTGGTGTTTTCGAGATAGGGTTTCTCTGTATAGCCCTGGC  50
         |||||||||    ||| ||||  ||||||||||||| ||| ||||||
seq2  ---TTTTTTTTT----TTTCCGAGGCAGGGTTTCTCTGTGTAGTCCTGGC  43

seq1  TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCACGAACTCAGAAATCT  100
      ||||||||||||||||||||||| ||||||||||  ||||||||||||| 
seq2  TGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTTGAACTCAGAAATCC  93

seq1  GCCTGCCTCTGCCTCCCAAGCGCTGGGATTAAAGGCGTGCGCCGCC-GCC  149
      ||||| |||||| ||||||| ||||||| |||||||||| ||| ||    
seq2  GCCTGACTCTGCTTCCCAAGGGCTGGGACTAAAGGCGTGAGCCACCA---  140

seq1  ACCTGGCAACTCTATCACTTTTTAAAAAAGATTTATTCATTTCGTGTACG  199
                                                        
seq2  --------------------------------------------------  140

seq1  TGACTGTCTTTAAACACGCCCTAGAAAGAGAGCATCAGATCCCTATTATA  249
                                                        
seq2  --------------------------------------------------  140

seq1  GATGTTTGTGAGCCACCA  267
                        
seq2  ------------------  140

seq1: chr15_56675921_56677029
seq2: B6Ng01-083M04.g_69_1175

seq1  GAATTCAAGGACCTACCCTCCTCTTTGACAGAGATAGCAAGTGCCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACCTACCCTCCTCTTTGACAGAGATAGCAAGTGCCTCATC  50

seq1  TCATAATCAGAAAAACATGGTCACTAGAGCAGGGATATCAGCAAACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATCAGAAAAACATGGTCACTAGAGCAGGGATATCAGCAAACAACT  100

seq1  TTGTCTGCAGGCTCCTCTGGACACAGCATGCATAAGAAACCCAAGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGCAGGCTCCTCTGGACACAGCATGCATAAGAAACCCAAGTGTCA  150

seq1  CTTCTTATTGTTCTATTTGAGATGTCAAAGACATGTCAGATTGCATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATTGTTCTATTTGAGATGTCAAAGACATGTCAGATTGCATTATT  200

seq1  TATTTCTAAGTAGAGAAATTTGACTCTATCTTCTACGTATTCCTCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAGTAGAGAAATTTGACTCTATCTTCTACGTATTCCTCTGTGA  250

seq1  GAACCAGTTTAATCTCTGAATAAACAAGAAACTTATATGAGGAAATTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTTTAATCTCTGAATAAACAAGAAACTTATATGAGGAAATTACT  300

seq1  TTCAAGTGAGTAAATGTTTGTCTGACTGGAAGTCTCTCTTTCTACTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGAGTAAATGTTTGTCTGACTGGAAGTCTCTCTTTCTACTGGCT  350

seq1  TCCCTCAAGTCTACAGGCACAGGCTTAGTGGTGGGAGGAAGTGTTTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAAGTCTACAGGCACAGGCTTAGTGGTGGGAGGAAGTGTTTTAAG  400

seq1  CAAAATTCCTGTGGTCATTTTTTCCATTTTCAAGCAATGGGTCACTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCCTGTGGTCATTTTTTCCATTTTCAAGCAATGGGTCACTTAGT  450

seq1  ATGCCTGGAGATTTGCCAAGTAGTTTACTTTTCTGCATCATTTAAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGAGATTTGCCAAGTAGTTTACTTTTCTGCATCATTTAAGCTAA  500

seq1  TTCTTTGTAAGACATATTTCCTGCCCAATTGGGAAAATGGACAAAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTAAGACATATTTCCTGCCCAATTGGGAAAATGGACAAAGAATG  550

seq1  AAGAAGAAGGAAAAAAAAAAAAACAGACAAAATGGAATAAAACCATGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGGAAAAAAAAAAAAACAGACAAAATGGAATAAAACCATGGCA  600

seq1  ACTGATTGAAAGCCATTATGTAGAATACAGTTAAGGAATAGGTATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTGAAAGCCATTATGTAGAATACAGTTAAGGAATAGGTATAATAA  650

seq1  AAGAGAATGATAGAATTATGTATAGTTCTTTCTGCATAGTTTACCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATGATAGAATTATGTATAGTTCTTTCTGCATAGTTTACCATTAA  700

seq1  TTCCTTTGAAATATGTGTATAAAATCAGTTAAAAGTTGTATATTAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGAAATATGTGTATAAAATCAGTTAAAAGTTGTATATTAATTAG  750

seq1  TAGAAGCAGAATGTAAGCTATTAC-TTTCCTTTAATTTAGTGTCACATAT  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGAAGCAGAATGTAAGCTATTACTTTTCCTTTAATTTAGTGTCACATAT  800

seq1  TTTAAATATTGGAAAGGTGCTTTGGG-AAGTCATATTTGAAACTCAAATA  848
      ||||||||||||||||||| |||||| ||||| | |||||||||||||||
seq2  TTTAAATATTGGAAAGGTGTTTTGGGAAAGTC-TTTTTGAAACTCAAATA  849

seq1  AGTCTAGTTTTATATCAT-ATATATATATATATATATATATATATATATA  897
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTCTAGTTTTATATCATAATATATATATATATATATATATATATATATA  899

seq1  TATATATGCAGTTAAAGGAGTTTCCTA-TTTCAGAGGCTGTGTTCCCAGG  946
      ||||||||||||||||||||||||||| ||||||||||||||||  ||||
seq2  TATATATGCAGTTAAAGGAGTTTCCTATTTTCAGAGGCTGTGTTTTCAGG  949

seq1  TTAA-TTATGTTTCCATTACTCAATGCTTAGTGCTTTTCCTTGTATAGAT  995
      |||| |||||||| ||||||||| ||||||||||||||||||| ||||||
seq2  TTAATTTATGTTT-CATTACTCATTGCTTAGTGCTTTTCCTTG-ATAGAT  997

seq1  CTGTTGATTTCTCCTTTCCTACCTTACCAAATGATCAATCAGCCTGCTTT  1045
      ||||||| |||| |||||||  |||||| |||||||||||||||||||||
seq2  CTGTTGA-TTCT-CTTTCCTTACTTACC-AATGATCAATCAGCCTGCTTT  1044

seq1  A-TCTTAAGTGGGAATAAGAAACCAGACATTCCATAGATGGAATC-TCTG  1093
      | ||||| |||||||||||||||   |||||||| || ||| ||| ||||
seq2  ATTCTTAGGTGGGAATAAGAAAC--AACATTCCAAAGTTGGGATCTTCTG  1092

seq1  AAATGAGGGAAAGGAC  1109
      |||||| |||||||||
seq2  AAATGA-GGAAAGGAC  1107