BAC Information

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BAC

Clone NameB6Ng01-085E18
ChromosomeY (Build37)5 (Build37)
Map Location 573,321 - 573,5495,326,204 - 5,327,270
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085E18.bB6Ng01-085E18.g
ACCDH899010DH899011
length4361,072
definitionDH899010|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E18, 5' end.DH899011|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,549)(5,326,204 - 5,327,270)
sequence
cttaaaccacttagatttgaccttagtacaaggagatacccagggatcca
ccccataatcagactccaaacacagacaccattgcatactccagcaagat
tttgctgaaaggatcctgatatagctgtctcttgtgaggctatgccagtg
cctggcaaacacagaagtggatgctcacagtcagctattggatgcaacac
agggtctccaatggaggagctagagaaagtacccaaggagctaaaggggt
ctgcaaccctataggtggaacaacagtatgaactaacaagtacccccaga
gctaatgtctctagctgcatatgtagcagaatatggcctagtaggccatc
attgggaagagaggccccttggttttgcaaactttgcctcagtacagggg
aacaccagggccaagaagtgggagtgggtgggtagg
gaattctttcaggtccaactgtgggtagagggaagctgatgtatggttaa
tgaatgtcattcagtcaactgaagaacaagagaataaaatcaagcatcat
cctttgaaagtttgttgatgtcctgagacacggtaggtaagttatcccta
aacttaattccttaaagcaacgccatacatcccttctctcccagaattcc
tgtgtggcaggaatttgggcatgcccagccttgtgtttctggctcttctg
tcccttagaagatgtcagttggagctggagtgctatgaaggcttgactga
gccaggaggactgtctgctcactgactcaaccattggctgttggcagaaa
gccccagttcttgccacatggatgcctttgtagggctgcccaagtatcct
cttgtggtggcttcttccagaaggaggaatccaagagagaaagcccagtg
ggagccacatgccttttgtgaccttagaaatcatgtactgccatttcttc
tgtattctattggtctcacagatgaacactgcttaggatagaaggcgact
cctataccaagtaaatgccaggcaaaggacgatcctggggcgtttcccag
agaatgtccaccctttctgcaaagcctcacatctctcccacctgtcagac
agaatgctcactctgctcaagaacccatgggtcatctttagaggaatcca
tatctttgagcagggtcagagctgtttaaacagattttgaaaactagaga
tttattaaacgttttcctttattggaagagattgttgggatttggcagtg
ttctcaatttagaaaacaatttatgtttctgtcccaaggattttctggcc
cgaatttattagtaaattatatttttcattcgttgagagaggaattggaa
gcttagtgcaatactcttaagttttagttcagaaagatgtataacattgt
tttcaaattgtagctgaggttcctggaaaacccgtactgtaaggtttgtc
tagccagggagatggattctaatagggaatatatgatgtccaacagtgca
ggctggccagtgtggtttagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573549
seq2: B6Ng01-085E18.b_260_485

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| |||||||||| |||||| |||| |||| || ||||||| ||||||
seq2  ATAGGTGGAACAACAGTATGAACTAACAAGTACCCCCAGAGCTAATGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| ||||| |||||||||| |||||||||||||||||
seq2  CTAGCTGCATATGTAGCAGAATATGGCCTAGTAGGCCATCATTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
      ||||||||||||| ||||||||||    |||| |||||||||||||||||
seq2  GAGGCCCCTTGGTTTTGCAAACTT----TGCCTCAGTACAGGGGAACACC  196

seq1  AGGGCCAAGAAGTGGGAGAAGGTGGGTAGG  229
      ||||||||||||||||||  ||||||||||
seq2  AGGGCCAAGAAGTGGGAGTGGGTGGGTAGG  226

seq1: chr5_5326204_5327270
seq2: B6Ng01-085E18.g_70_1141 (reverse)

seq1  AGCTAAACCACAACTGGCCAGCCTGCACTGTTGGACATCCATTATTTCCC  50
      ||||||||||| |||||||||||||||||||||||||| |||   |||||
seq2  AGCTAAACCAC-ACTGGCCAGCCTGCACTGTTGGACAT-CATATATTCCC  48

seq1  TATTAGATTCCATCTCCCTGGCTTGACAACCCTT-CAGTACGGGTTTTCC  99
      ||||||| ||||||||||||||| ||||| |||| |||||||||||||||
seq2  TATTAGAATCCATCTCCCTGGCTAGACAAACCTTACAGTACGGGTTTTCC  98

seq1  AGGAACCTCAGCTACAAATTTGAAAACAAATGTTATACATCTTTCTG-AC  148
      ||||||||||||||| ||||||||||| ||||||||||||||||||| ||
seq2  AGGAACCTCAGCTAC-AATTTGAAAAC-AATGTTATACATCTTTCTGAAC  146

seq1  TAAAAC-TAAGAGTATTGCACTAAGCTTCCATTTCCTCTCTC-ACG-ATG  195
      |||||| |||||||||||||||||||||||| |||||||||| ||| |||
seq2  TAAAACTTAAGAGTATTGCACTAAGCTTCCAATTCCTCTCTCAACGAATG  196

seq1  ATAAATAT-ATTTTCT-ATTAATTCGGGCCAGAAATTCCTTGGGACAG-A  242
      | |||||| |||| || || ||||||||||||||| |||||||||||| |
seq2  AAAAATATAATTTACTAATAAATTCGGGCCAGAAAATCCTTGGGACAGAA  246

seq1  ACATAAATTGTTTTCT-AATTGAGAACACTGCCAAATCCCAACAATCTCT  291
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATAAATTGTTTTCTAAATTGAGAACACTGCCAAATCCCAACAATCTCT  296

seq1  TCCAATAAAGGAAAACGTTTAATAAATCTCTAGTTTTCAAAATCTGTTTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAAGGAAAACGTTTAATAAATCTCTAGTTTTCAAAATCTGTTTA  346

seq1  AACAGCTCTGACCCTGCTCAAAGATATGGATTCCTCTAAAGATGACCCAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCTGACCCTGCTCAAAGATATGGATTCCTCTAAAGATGACCCAT  396

seq1  GGGTTCTTGAGCAGAGTGAGCATTCTGTCTGACAGGTGGGAGAGATGTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTGAGCAGAGTGAGCATTCTGTCTGACAGGTGGGAGAGATGTGA  446

seq1  GGCTTTGCAGAAAGGGTGGACATTCTCTGGGAAACGCCCCAGGATCGTCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCAGAAAGGGTGGACATTCTCTGGGAAACGCCCCAGGATCGTCC  496

seq1  TTTGCCTGGCATTTACTTGGTATAGGAGTCGCCTTCTATCCTAAGCAGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGGCATTTACTTGGTATAGGAGTCGCCTTCTATCCTAAGCAGTG  546

seq1  TTCATCTGTGAGACCAATAGAATACAGAAGAAATGGCAGTACATGATTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGTGAGACCAATAGAATACAGAAGAAATGGCAGTACATGATTTC  596

seq1  TAAGGTCACAAAAGGCATGTGGCTCCCACTGGGCTTTCTCTCTTGGATTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCACAAAAGGCATGTGGCTCCCACTGGGCTTTCTCTCTTGGATTC  646

seq1  CTCCTTCTGGAAGAAGCCACCACAAGAGGATACTTGGGCAGCCCTACAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGGAAGAAGCCACCACAAGAGGATACTTGGGCAGCCCTACAAA  696

seq1  GGCATCCATGTGGCAAGAACTGGGGCTTTCTGCCAACAGCCAATGGTTGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCATGTGGCAAGAACTGGGGCTTTCTGCCAACAGCCAATGGTTGA  746

seq1  GTCAGTGAGCAGACAGTCCTCCTGGCTCAGTCAAGCCTTCATAGCACTCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGCAGACAGTCCTCCTGGCTCAGTCAAGCCTTCATAGCACTCC  796

seq1  AGCTCCAACTGACATCTTCTAAGGGACAGAAGAGCCAGAAACACAAGGCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAACTGACATCTTCTAAGGGACAGAAGAGCCAGAAACACAAGGCT  846

seq1  GGGCATGCCCAAATTCCTGCCACACAGGAATTCTGGGAGAGAAGGGATGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCCCAAATTCCTGCCACACAGGAATTCTGGGAGAGAAGGGATGT  896

seq1  ATGGCGTTGCTTTAAGGAATTAAGTTTAGGGATAACTTACCTACCGTGTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGTTGCTTTAAGGAATTAAGTTTAGGGATAACTTACCTACCGTGTC  946

seq1  TCAGGACATCAACAAACTTTCAAAGGATGATGCTTGATTTTATTCTCTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACATCAACAAACTTTCAAAGGATGATGCTTGATTTTATTCTCTTG  996

seq1  TTCTTCAGTTGACTGAATGACATTCATTAACCATACATCAGCTTCCCTCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGTTGACTGAATGACATTCATTAACCATACATCAGCTTCCCTCT  1046

seq1  ACCCACAGTTGGACCTGAAAGAATTC  1067
      ||||||||||||||||||||||||||
seq2  ACCCACAGTTGGACCTGAAAGAATTC  1072