BAC Information

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BAC

Clone NameB6Ng01-085L06
ChromosomeY (Build37)4 (Build37)
Map Location 1,120,761 - 1,120,96036,063,877 - 36,064,855
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085L06.bB6Ng01-085L06.g
ACCDH899307DH899308
length499975
definitionDH899307|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L06, 5' end.DH899308|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,761 - 1,120,960)(36,063,877 - 36,064,855)
sequence
gaattcatattagctcttctttgaaagtctggtagaattctatgctaaaa
tcatctggccctaagcttttgttttgttgggagattttagtcactagatc
tatttccttggagtttataggactattaaaattgttcagatgatctcagt
ttaactttggtacgtgaaatctataaagaaatcatccatttcatttagat
tttcccaattttgtcaatacaggcttttgaagaaagacctaaagttttct
aaagtttttttttttttttttttttttttttttttttttaaaacttcctc
agtgatggccgactaggccatcttttgatacatatgcagctagagtcaaa
agctccccggtactggttagttcataatgttgttccacctatagggttgc
aaatccctttagctccttggctactttctctagctcctccattgggagcc
ctgtgatccatccattagctgactgtgagcatccacttctgtgtttgct
gaattcagttcagtgaagtttggagcagttgggttcctgcagtatgcaag
aagccaagcaaagccattttgcattattcagcttggagagttttgaacca
gaatacctgagttgaacctgccagctgtagttcagaaagaactggaacgg
gtgaggttattcatcagtaggcctctgagatgacaattacagctgggaat
taaaagttactataaccgatgtcatttaacccaaaggtagagatcttggt
ggccagcaagataaacatagaagcagttaaaagagatcaacaattgtatc
atatgttctgacttgttgctctttcaacatttcaaagtgagtgaagtata
tttattttatagatcttaaattaacaatgtgcaattgaagacagttgtaa
aatatagtcctttggtaattaagagtccagaactttttcacccaaaggga
gcaaaagtaagtaaataaaaccaaaagagcaaaattgaatagcagacagt
ctttgtagacacttttttttataggcaacatttttagaaggagaatgaat
gacacaaaagaatttaacaaatactagaaactgtctatataattccagca
tagacagtcctaatgaaggcttatggaccacagacagaaattgtacctgt
cttcctgttttctttttttataaaatagagaaaatggtggctgcaacagc
agtacccacactgcagagttaatggtaaatccatgcttttttcttcacca
taaataaaaggaaatagtgccccaaacttgtcgttttaagagtaagacat
ttctttaaccataaacaataataatcatatatactgcgcataacacacag
tagaataaaggcacacacacacacgtatattaaagttgtatgtattgtta
aaaccatatcaaatggaagtaatacacatattctttaaaaccacagactc
taccatggggtcttaacattggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120761_1120960
seq2: B6Ng01-085L06.b_345_544

seq1  CAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAA  50

seq1  GAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTG  100
       ||||||  |||||||||||| |||||| |||||||||||||||||||||
seq2  AAGCTCCCCGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTG  100

seq1  GAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGC  150
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGC  150

seq1  CCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCT  200

seq1: chr4_36063877_36064855
seq2: B6Ng01-085L06.g_69_1043

seq1  GAATTCAGTTCAGTGAAGTTTGGAGCAGTTGGGTTCCTGCAGTATGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCAGTGAAGTTTGGAGCAGTTGGGTTCCTGCAGTATGCAAG  50

seq1  AAGCCAAGCAAAGCCATTTTGCATTATTCAGCTTGGAGAGTTTTGAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGCAAAGCCATTTTGCATTATTCAGCTTGGAGAGTTTTGAACCA  100

seq1  GAATACCTGAGTTGAACCTGCCAGCTGTAGTTCAGAAAGAACTGGAACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCTGAGTTGAACCTGCCAGCTGTAGTTCAGAAAGAACTGGAACGG  150

seq1  GTGAGGTTATTCATCAGTAGGCCTCTGAGATGACAATTACAGCTGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTATTCATCAGTAGGCCTCTGAGATGACAATTACAGCTGGGAAT  200

seq1  TAAAAGTTACTATAACCGATGTCATTTAACCCAAAGGTAGAGATCTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTACTATAACCGATGTCATTTAACCCAAAGGTAGAGATCTTGGT  250

seq1  GGCCAGCAAGATAAACATAGAAGCAGTTAAAAGAGATCAACAATTGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCAAGATAAACATAGAAGCAGTTAAAAGAGATCAACAATTGTATC  300

seq1  ATATGTTCTGACTTGTTGCTCTTTCAACATTTCAAAGTGAGTGAAGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCTGACTTGTTGCTCTTTCAACATTTCAAAGTGAGTGAAGTATA  350

seq1  TTTATTTTATAGATCTTAAATTAACAATGTGCAATTGAAGACAGTTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATAGATCTTAAATTAACAATGTGCAATTGAAGACAGTTGTAA  400

seq1  AATATAGTCCTTTGGTAATTAAGAGTCCAGAACTTTTTCACCCAAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTCCTTTGGTAATTAAGAGTCCAGAACTTTTTCACCCAAAGGGA  450

seq1  GCAAAAGTAAGTAAATAAAACCAAAAGAGCAAAATTGAATAGCAGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTAAGTAAATAAAACCAAAAGAGCAAAATTGAATAGCAGACAGT  500

seq1  CTTTGTAGACACTTTTTTTTATAGGCAACATTTTTAGAAGGAGAATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGACACTTTTTTTTATAGGCAACATTTTTAGAAGGAGAATGAAT  550

seq1  GACACAAAAGAATTTAACAAATACTAGAAACTGTCTATATAATTCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAAGAATTTAACAAATACTAGAAACTGTCTATATAATTCCAGCA  600

seq1  TAGACAGTCCTAATGAAGGCTTATGGACCACAGACAGAAATTGTACCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTCCTAATGAAGGCTTATGGACCACAGACAGAAATTGTACCTGT  650

seq1  CTTCCTGTTTTCTTTTTTTATAAAATAGAGAAAATGGTGGCTGCAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTTTCTTTTTTTATAAAATAGAGAAAATGGTGGCTGCAACAGC  700

seq1  AGTACCCACACTGCAGAGTTAATGGTAAATCCATGCTTTTTTCTTCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCACACTGCAGAGTTAATGGTAAATCCATGCTTTTTTCTTCACCA  750

seq1  TAAATAAAAGGAAATAGTGCCCCAAACTTGTCGTTTTAAGAGTAAGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAAGGAAATAGTGCCCCAAACTTGTCGTTTTAAGAGTAAGACAT  800

seq1  TTCTTTAACCATAAACAATAATAATCATATATACTGCGCATAACACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAACCATAAACAATAATAATCATATATACTGCGCATAACACACAG  850

seq1  TAGAATAAAGGCACACACACACACGTATATTAAAGTTGTATGTTATTGTT  900
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TAGAATAAAGGCACACACACACACGTATATTAAAGTTGTATG-TATTG-T  898

seq1  TAAAACCATATCAAATGGAAGTAATACACATATTCTTTTAGACCACAGAC  950
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TAAAACCATATCAAATGGAAGTAATACACATATTCTTTAAAACCACAGAC  948

seq1  TCTACCATGGGGTCCTTATCATTTGGTTT  979
      ||||||||||||| |||| || |||||||
seq2  TCTACCATGGGGT-CTTAACA-TTGGTTT  975