BAC Information

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BAC

Clone NameB6Ng01-085M11
ChromosomeY (Build37)8 (Build37)
Map Location 1,544,645 - 1,544,79648,941,313 - 48,942,166
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M11.bB6Ng01-085M11.g
ACCDH899354DH899355
length542857
definitionDH899354|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M11, 5' end.DH899355|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,544,645 - 1,544,796)(48,941,313 - 48,942,166)
sequence
gaattcatagccactatgcctcaagatctccataccaagatccaggtcag
aaacttctaactcccagcctccaggttagggtcactggtgagccttccaa
ttctggattgtagtttattccagatatagtcaagttgacaaccaggaata
gccactacaaagaccattgctcttaatgctgagatatcaatatgactact
ttcatgagacttcaatatacactggcaaacagagatgacataaatattaa
ggcataaatattggggtgaggtatagctcaatgataagaacaccacctcc
ttcctctctgatgactagcttgtgccaacttgatacaaaaaacaggaagt
ataccaactcagattagaaggagaatggatgcttaagaagaagaagagaa
gaaggagaaggaggaggaagaaaaggagaaaaagaaggaggaggaggaga
aaagaaggagaagaaggagaaaagaaggagaaggaggagaaggagaagaa
agagaagaaggagaaggaggagaaggagaaagaagaagagga
gaattcaagtcaaaggttcctatgatcattaaaacaacaaagcctcaagg
aacttttttatgggagatgagttctacttgaatctaagctggactggtct
ctcctaggctgctgggagcaagtggggcttgggaaaggaagagatactca
tgaaggccagcagacccctgccctccgcaggctgtgctccatggcacacc
actgctattcccagctccgactcaccaggtctatagggtcgagcatgggc
tgctgagaccgagctccaggctcctcatttccgtcttcattcttcttgca
aggcatttgcttggaaggaagcaaattataccacagcatgaagatctcat
tggaaaatggtaaatccgccaggctgatctgcgtcccagcctatgggaag
tggaagaaatgaagggagagagagagaaaaatgcgagtatttagtatttt
aaattagtatttgttctctctggtaagacaaaggcgaatgggtgagaatt
gtcttaaagcagaagcaacaccctattggtgacatacggggctgcctgtg
tgtgtatgtatatgcacgtgcctgtgtttgtgtgctggtgtgttcttgag
tgtttgtgcagtggtcagaggacgactttgagacatttttcctcagtttc
tttcttcactgtttgtttgtttaggaatgacagatagggtctctcactga
aacctctagccccagcactggggttaaggcacacgtgtgccgtggtctac
acctaggcgctcacacattcccagcagagcctacccatgggggccactcc
cctcctcagcgctggcggtttaaaatctgggacagatttatatcttcagt
aactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1544645_1544796
seq2: B6Ng01-085M11.b_43_201

seq1  GAATCCATAGCCACTATGGCTCAAGATCTCCATACCAAGATCCAGATAAG  50
      |||| ||||||||||||| |||||||||||||||||||||||||| | ||
seq2  GAATTCATAGCCACTATGCCTCAAGATCTCCATACCAAGATCCAGGTCAG  50

seq1  -------GATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCCTTCCAA  93
              | |||| ||||||||| | |||||||||||||||||||||||
seq2  AAACTTCTAACTCCCAGCCTCCAGGTTAGGGTCACTGGTGAGCCTTCCAA  100

seq1  TTCCGGATTGTAGTTCATTCCAAATATTGTCAAGTTGACAACCAGGAATA  143
      ||| ||||||||||| |||||| |||| ||||||||||||||||||||||
seq2  TTCTGGATTGTAGTTTATTCCAGATATAGTCAAGTTGACAACCAGGAATA  150

seq1  GCCACTACA  152
      |||||||||
seq2  GCCACTACA  159

seq1: chr8_48941313_48942166
seq2: B6Ng01-085M11.g_71_927

seq1  GAATTCAAGTCAAAGGTTCCTATGATCATTAAAACAACAAAGCCTCAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCAAAGGTTCCTATGATCATTAAAACAACAAAGCCTCAAGG  50

seq1  AACTATTTTATGGGAGATGAGTTCTACTTGAATCTAAGCTGGACTGGTCT  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTTATGGGAGATGAGTTCTACTTGAATCTAAGCTGGACTGGTCT  100

seq1  CTCCTAGGCTGCTGGGAGCAAGTGGGGCTTGGGAAAGGAAGAGATACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGGCTGCTGGGAGCAAGTGGGGCTTGGGAAAGGAAGAGATACTCA  150

seq1  TGAAGGCCAGCAGACCCCTGCCCTCCGCAGGCTGTGCTCCATGGCACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCAGCAGACCCCTGCCCTCCGCAGGCTGTGCTCCATGGCACACC  200

seq1  ACTGCTATTCCCAGCTCCGACTCACCAGGTCTATAGGGTCGAGCATGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATTCCCAGCTCCGACTCACCAGGTCTATAGGGTCGAGCATGGGC  250

seq1  TGCTGAGACCGAGCTCCAGGCTCCTCATTTCCGTCTTCATTCTTCTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGACCGAGCTCCAGGCTCCTCATTTCCGTCTTCATTCTTCTTGCA  300

seq1  AGGCATTTGCTTGGAAGGAAGCAAATTATACCACAGCATGAAGATCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTGCTTGGAAGGAAGCAAATTATACCACAGCATGAAGATCTCAT  350

seq1  TGGAAAATGGTAAATCCGCCAGGCTGATCTGCGTCCCAGCCTATGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGGTAAATCCGCCAGGCTGATCTGCGTCCCAGCCTATGGGAAG  400

seq1  TGGAAGAAATGAAGGGAGAGAGAGAGAAAAATGCGAGTATTTAGTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAATGAAGGGAGAGAGAGAGAAAAATGCGAGTATTTAGTATTTT  450

seq1  AAATTAGTATTTGTTCTCTCTGGTAAGACAAAGGCGAATGGGTGAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTATTTGTTCTCTCTGGTAAGACAAAGGCGAATGGGTGAGAATT  500

seq1  GTCTTAAAGCAGAAGCAACACCCTATTGGTGACATACGGGGCTGCCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAGCAGAAGCAACACCCTATTGGTGACATACGGGGCTGCCTGTG  550

seq1  TGTGTATGTATATGCACGTGCCTGTGTTTGTGTGCTGGTGTGTTCTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTATATGCACGTGCCTGTGTTTGTGTGCTGGTGTGTTCTTGAG  600

seq1  TGTTTGTGCAGTGGTCAGAGGACGACTTTGAGACA-TTTTCCTCAGTTTC  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTTGTGCAGTGGTCAGAGGACGACTTTGAGACATTTTTCCTCAGTTTC  650

seq1  -TTCTTCACTGTTTGTTTGTTTAGGAATGACAGATAGGGTCTCTCACTG-  697
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTCTTCACTGTTTGTTTGTTTAGGAATGACAGATAGGGTCTCTCACTGA  700

seq1  AACCTCTAGCCCCAGCACTGGGGTTAAGGCACACGTGTGCCGTGGTCTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTAGCCCCAGCACTGGGGTTAAGGCACACGTGTGCCGTGGTCTAC  750

seq1  ACCTAGGCGCTCACACATTCCCAGCAGAGCCTAACCCAT-GGGGCCACTC  796
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  ACCTAGGCGCTCACACATTCCCAGCAGAGCCT-ACCCATGGGGGCCACTC  799

seq1  CCCTCCTCAGCGCTGGCGGTTTTAAAATCT-GGACAGATTTATATCTTCA  845
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CCCTCCTCAGCGCTGGCGG-TTTAAAATCTGGGACAGATTTATATCTTCA  848

seq1  GTAACCTTT  854
      ||||| |||
seq2  GTAACTTTT  857