BAC Information

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BAC

Clone NameB6Ng01-086B02
ChromosomeY (Build37)1 (Build37)
Map Location 2,430,616 - 2,430,676103,686,956 - 103,687,629
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B02.bB6Ng01-086B02.g
ACCDH899566DH899567
length541674
definitionDH899566|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B02, 5' end.DH899567|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,616 - 2,430,676)(103,686,956 - 103,687,629)
sequence
gaattcttctaaatgcatacatctgttttattgccaccttttctttatga
tttatccttttattcaatgagcatttcactattctttaccaaaaatcaag
tttcaacatgtaggtgcatatatggctgtgatttcagttttatcaaagtg
tcttttttatgccaataccatggagtttttaatcactatagctttcttgt
ataattttaaatctggaatagtgacgcaatggttcttttattgtttgtga
tattgtttttagctctctcttggagtctctctctctctctctctctctct
ctctctctctctctctctctctctcttgtatttacatatgaaactaaaat
ttttcctttcaaaatctatgaggaattgttctggaattttgatgggaatt
gtattgaatctgtagattgcattgacaaataaccaaaaaatcaaagtaac
accctacattacatcaaatcaccatggaataagctgggaatcagcaagaa
tacaaccaatagaaagcttacaaaggcgttataacttaata
gaattcaaataatatccatggtaatttcttcctgctgtgaagttgaacgt
gaaatctgtgaatggtattttcttaaaatgttattttaggaaagggtaaa
attgaagggagagaaactgcccaccttctaagtacacaccaatatatgtt
ttgaagcctatggaacatctttgtgaatgttatgtaggagaaaacaaaag
catagagactaacctttcatctataatatggccatgtctctttttgtgtt
gtgaagaatattacttggcactctattttgatgtacacaactatctgcag
tgttgtttaaataagttgctaatattctgagttttgtttttgtagcaatg
ataaagacattgatcaaaagtaactcagaaacataagggtttatttaatt
ttacagataaaatctataatgaagtgaagtgaggttggaaactgaaggca
ggaatttgcaggcaggaactgatacacaggcaatgaaagagtcctgctta
ctttctttgataagttttataaagtcaattatgtgttttgtagagatgtg
tggtatggtgcctcaggaggcccaattgaagcatcctcccactgagatgt
tagccatattacaggtctaatatagaatagaatttacttggaagcatggg
aaagggagttgagaagggaacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430616_2430676
seq2: B6Ng01-086B02.b_308_372

seq1  CTCTCTCT----CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  46
      ||||||||     |||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTGGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTT  61
      |||||||||||||||
seq2  CTCTCTCTCTCTCTT  65

seq1: chr1_103686956_103687629
seq2: B6Ng01-086B02.g_66_739 (reverse)

seq1  TCTGTTCCCTTCTCAACTCCCTTTCCCATGCTTCCAAGTAAATTCTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCCTTCTCAACTCCCTTTCCCATGCTTCCAAGTAAATTCTATTC  50

seq1  TATATTAGACCTGTAATATGGCTAACATCTCAGTGGGAGGATGCTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGACCTGTAATATGGCTAACATCTCAGTGGGAGGATGCTTCAAT  100

seq1  TGGGCCTCCTGAGGCACCATACCACACATCTCTACAAAACACATAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCCTGAGGCACCATACCACACATCTCTACAAAACACATAATTGA  150

seq1  CTTTATAAAACTTATCAAAGAAAGTAAGCAGGACTCTTTCATTGCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAAACTTATCAAAGAAAGTAAGCAGGACTCTTTCATTGCCTGTG  200

seq1  TATCAGTTCCTGCCTGCAAATTCCTGCCTTCAGTTTCCAACCTCACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTCCTGCCTGCAAATTCCTGCCTTCAGTTTCCAACCTCACTTCA  250

seq1  CTTCATTATAGATTTTATCTGTAAAATTAAATAAACCCTTATGTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTATAGATTTTATCTGTAAAATTAAATAAACCCTTATGTTTCTGA  300

seq1  GTTACTTTTGATCAATGTCTTTATCATTGCTACAAAAACAAAACTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTTGATCAATGTCTTTATCATTGCTACAAAAACAAAACTCAGAA  350

seq1  TATTAGCAACTTATTTAAACAACACTGCAGATAGTTGTGTACATCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAACTTATTTAAACAACACTGCAGATAGTTGTGTACATCAAAAT  400

seq1  AGAGTGCCAAGTAATATTCTTCACAACACAAAAAGAGACATGGCCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCAAGTAATATTCTTCACAACACAAAAAGAGACATGGCCATATT  450

seq1  ATAGATGAAAGGTTAGTCTCTATGCTTTTGTTTTCTCCTACATAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAAAGGTTAGTCTCTATGCTTTTGTTTTCTCCTACATAACATTC  500

seq1  ACAAAGATGTTCCATAGGCTTCAAAACATATATTGGTGTGTACTTAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATGTTCCATAGGCTTCAAAACATATATTGGTGTGTACTTAGAAG  550

seq1  GTGGGCAGTTTCTCTCCCTTCAATTTTACCCTTTCCTAAAATAACATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTTTCTCTCCCTTCAATTTTACCCTTTCCTAAAATAACATTTT  600

seq1  AAGAAAATACCATTCACAGATTTCACGTTCAACTTCACAGCAGGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATACCATTCACAGATTTCACGTTCAACTTCACAGCAGGAAGAAA  650

seq1  TTACCATGGATATTATTTGAATTC  674
      ||||||||||||||||||||||||
seq2  TTACCATGGATATTATTTGAATTC  674