BAC Information

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BAC

Clone NameB6Ng01-087A05
ChromosomeY (Build37)
Map Location 745,546 - 928,821
singlet/doubletdoublet
Overlap geneUsp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A05.bB6Ng01-087A05.g
ACCDH900257DH900258
length1,230477
definitionDH900257|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A05, 5' end.DH900258|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(745,546 - 746,632)(928,339 - 928,821)
sequence
gaattcaccttcagtagatagacagggctccaagtggaggaatggggtta
ccaacccactgtcaaaatttgtgactcagaattgttcctatctaaaagaa
ctgcactgacgaaatggagaagagactggaggaaaggtgctccagtgaat
ggcccaacttgggagccatgtcatagagaacagggtggacatcaaggttt
gacatttatgcctttactggtgctttgatgtgcttgcagacaggagcctg
ccatagcatggctgccctctgaaaggccctacgggtagctgactgaggca
tatgctgatgcttacacccatccactagcctgaggtaggggtccctatgg
agaaattaggaggaggattgaaggagctgaagaagatgagaagaacagaa
gtctcaactaactcaacctcatggagttctcagagactgagccactaacc
agggaacatacataggctagtctgaggtccctggcacatatatagtagag
gactgtcttgactgtcctcagtggagaggatgctcttaatcctgtagagg
cttgaggccccagggaaggggatcagggctggtggaacaccctatcagga
tgatgaacagtggcaggggggcaacatttgaaatgtaaataaataaaata
attaaaaaacttggctacactgtgtacacacacacacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacagagcaggaaaacatcaaggagagaagacaagc
ttaaggaaacaattcaagcatcaatagaaaggaagaaataaacatgacta
caactttcaaaaatgctgttacatgttatagagatcaagaaaggtattaa
gatatcataaagaaagaacaaaaaggagctcagatacaaacccaagggta
gaatatgttttcactgaaatcgtggcataagttttctatagcacaagaag
aaattttcaaagtatacattgtatacattacagtcaaaatatattttaag
aaacacaacaaatcaatgtttaaataaatgcaaaagcaaaacaatttaaa
accacattgtaactaaaggccttttgagatggggagccaattaactcgta
ctacaagtactgcccataatgcctgaatttgccctttgaactgcatgtac
aagaaaaaaaatacattcgtcaagcttagt
tccatacaggttaggtgaggatgttttcataaacagacagtgtcctggag
acaacaaggttagcagtataagctcatgttttgcccttttatgaaaccat
actgtcttatacatgtctaaaagatattgactttgtaacctcaatactgc
tgcccttaacctcattggagactggcagtcagtagatttttttttaatgt
gcttgctatacaaaacttttgtttgagattttatagttcctttttttctg
ttctaaatatgcactactctgtatcaccagaaaatgttgtcacaggaaaa
tagagaagcatttaataacccctcccccacccccatgatctttgtaaccc
aacttccttatatgatttcaataagactgggcctgagacaagtctgcaga
gcaccctgactcctgagttcatgggctctcatggcaaagaaggaggagga
ggaggaggatgaggaggagtaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_745546_746632
seq2: B6Ng01-087A05.b_200_1270

seq1  TGGGAGCCATGTCATAGAGAACAGGGTGGACATCAAGGTTTGACATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCATGTCATAGAGAACAGGGTGGACATCAAGGTTTGACATTTAT  50

seq1  GCCTTTACTGGTGCTTTGATGTGCTTGCAGACAGGAGCCTGCCATAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACTGGTGCTTTGATGTGCTTGCAGACAGGAGCCTGCCATAGCAT  100

seq1  GGCTGCCCTCTGAAAGGCCCTACGGGTAGCTGACTGAGGCATATGCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCTCTGAAAGGCCCTACGGGTAGCTGACTGAGGCATATGCTGAT  150

seq1  GCTTACACCCATCCACTAGCCTGAGGTAGGGGTCCCTATGGAGAAATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACACCCATCCACTAGCCTGAGGTAGGGGTCCCTATGGAGAAATTAG  200

seq1  GAGGAGGATTGAAGGAGCTGAAGAAGATGAGAAGAACAGAAGTCTCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGATTGAAGGAGCTGAAGAAGATGAGAAGAACAGAAGTCTCAACT  250

seq1  AACTCAACCTCATGGAGTTCTCAGAGACTGAGCCACTAACCAGGGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACCTCATGGAGTTCTCAGAGACTGAGCCACTAACCAGGGAACAT  300

seq1  ACATAGGCTAGTCTGAGGTCCCTGGCACATATATAGTAGAGGACTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGCTAGTCTGAGGTCCCTGGCACATATATAGTAGAGGACTGTCTT  350

seq1  GACTGTCCTCAGTGGAGAGGATGCTCTTAATCCTGTAGAGGCTTGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCTCAGTGGAGAGGATGCTCTTAATCCTGTAGAGGCTTGAGGCC  400

seq1  CCAGGGAAGGGGATCAGGGCTGGTGGAACACCCTATCAGGATGATGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAGGGGATCAGGGCTGGTGGAACACCCTATCAGGATGATGAACA  450

seq1  GTGGCAGGGGGGCAACATTTGAAATGTAAATAAATAAAATAATTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGGGGCAACATTTGAAATGTAAATAAATAAAATAATTAAAAAA  500

seq1  CTTGGCTACACTGTGT--ACACACACACACACACACACACACACACACAC  548
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CTTGGCTACACTGTGTACACACACACACACACACACACACACACACACAC  550

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  600

seq1  ACACACACAGAGCAGGAAAACATCAAGGAGAGAAGACAAGCTTAAGGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGAGCAGGAAAACATCAAGGAGAGAAGACAAGCTTAAGGAAA  650

seq1  CAATTCAAGCATCAATAGAAAGGAAGAAATAAACATGACTACAACTTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAGCATCAATAGAAAGGAAGAAATAAACATGACTACAACTTTCA  700

seq1  AAAATGCTGTTACATGTTATAGAGATCAAAGAAAGGTATTAAGATATCAT  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAATGCTGTTACATGTTATAGAGATC-AAGAAAGGTATTAAGATATCAT  749

seq1  AAAGAAAGAACAAAAAGGAGCTCAGATACAAACCCAAGGGGTAGAAATAT  798
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  AAAGAAAGAACAAAAAGGAGCTCAGATACAAACCCAA-GGGTAG-AATAT  797

seq1  GTTTTCACTGAAATCGTGGCATTAAGTTTTCTATAGCACAAGAAGAAATT  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTTCACTGAAATCGTGGCA-TAAGTTTTCTATAGCACAAGAAGAAATT  846

seq1  TTCAAAGTATTACATTGTATTACATTTACAGTTCAAAATATATTTTAAGA  898
      ||||||||| ||||||||| |||| |||||| ||||||||||||||||||
seq2  TTCAAAGTA-TACATTGTA-TACA-TTACAG-TCAAAATATATTTTAAGA  892

seq1  AACACAACAAATCAATGTTTAAATTAAATGCAAAAGCAAAACAATATAAA  948
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  AACACAACAAATCAATGTTTAAA-TAAATGCAAAAGCAAAACAATTTAAA  941

seq1  ACCACATTGTAACTAAAGGCCTTTTGAGATGGGGTAGCAATTATACTCGT  998
      ||||||||||||||||||||||||||||||||||   |||||| ||||||
seq2  ACCACATTGTAACTAAAGGCCTTTTGAGATGGGGAGCCAATTA-ACTCGT  990

seq1  AACTACAAGTTACTTGCCATTATGCCTGAGTTTGCTCTTTGAGACTGGCA  1048
       |||||||| ||||  |||| |||||||| ||||| |||||| ||| |||
seq2  -ACTACAAG-TACTGCCCATAATGCCTGAATTTGCCCTTTGA-ACT-GCA  1036

seq1  TGGTACAAAGAAAAAAAATCAATTCTGTCAAGCTATAGT  1087
      | |||| ||||||||||||  |||| |||||||| ||||
seq2  T-GTAC-AAGAAAAAAAATACATTC-GTCAAGCT-TAGT  1071

seq1: chrY_928339_928821
seq2: B6Ng01-087A05.g_68_550 (reverse)

seq1  TCCTCCTACTCCTCCTCATCCTCCTCCTCCTCCTCCTTCTTTGCCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTACTCCTCCTCATCCTCCTCCTCCTCCTCCTTCTTTGCCATGAG  50

seq1  AGCCCATGAACTCAGGAGTCAGGGTGCTCTGCAGACTTGTCTCAGGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGAACTCAGGAGTCAGGGTGCTCTGCAGACTTGTCTCAGGCCCA  100

seq1  GTCTTATTGAAATCATATAAGGAAGTTGGGTTACAAAGATCATGGGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTGAAATCATATAAGGAAGTTGGGTTACAAAGATCATGGGGGTG  150

seq1  GGGGAGGGGTTATTAAATGCTTCTCTATTTTCCTGTGACAACATTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGTTATTAAATGCTTCTCTATTTTCCTGTGACAACATTTTCTG  200

seq1  GTGATACAGAGTAGTGCATATTTAGAACAGAAAAAAAGGAACTATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAGAGTAGTGCATATTTAGAACAGAAAAAAAGGAACTATAAAAT  250

seq1  CTCAAACAAAAGTTTTGTATAGCAAGCACATTAAAAAAAAATCTACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAAAAGTTTTGTATAGCAAGCACATTAAAAAAAAATCTACTGAC  300

seq1  TGCCAGTCTCCAATGAGGTTAAGGGCAGCAGTATTGAGGTTACAAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCTCCAATGAGGTTAAGGGCAGCAGTATTGAGGTTACAAAGTCA  350

seq1  ATATCTTTTAGACATGTATAAGACAGTATGGTTTCATAAAAGGGCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTAGACATGTATAAGACAGTATGGTTTCATAAAAGGGCAAAAC  400

seq1  ATGAGCTTATACTGCTAACCTTGTTGTCTCCAGGACACTGTCTGTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTATACTGCTAACCTTGTTGTCTCCAGGACACTGTCTGTTTATG  450

seq1  AAAACATCCTCACCTAACCTGTATGGAGAATTC  483
      |||||||||||||||||||||||||||||||||
seq2  AAAACATCCTCACCTAACCTGTATGGAGAATTC  483