BAC Information

Click to search

BAC

Clone NameB6Ng01-087K05
Chromosome9 (Build37)Y (Build37)
Map Location 81,699,771 - 81,700,896248,288 - 248,459
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream gene4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087K05.bB6Ng01-087K05.g
ACCDH900708DH900709
length1,125965
definitionDH900708|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K05, 5' end.DH900709|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,699,771 - 81,700,896)(248,288 - 248,459)
sequence
gaattcctctacacagttctctctacagctatcctgtttctaatgaagtg
atcttccagaatgctcgggattaccactttcacttaagtgtttgggagct
cttcacttatacctggattagcagaaaaggaaagaacaagattatttgag
gagtctgagagaaaacctcagacaggacaattactctgatatcagtgtca
aatatcaagcccatagcttagctgttggatttgatgctgagctgtggagg
aacgcttgcagacagatatgcaagagcaatcatgtgaggagagagtatat
gtctgtggaacctgtgcgatgtgggatggacggaaagctagggagacaag
cgggagttcttagaataccagagaggagacacaaatggaatctacagatt
ctcttcttaagtttttatcagagattagtcagctgggttttgagcaagca
gtctaaagctacaaaaggatccacctgacagtatgacagataatactgct
tttacaaatcagagttaaagttcaggccccaggcaaagataaaatcacaa
ggcctggaaatacacagctttatacaaaggaataaagaactctgaacaca
gaaactatttgaacaaatacataataccaaattttatttttttttagata
ttttctttatttacattgcaaatgttatcccctttcctggtttcccctcc
taaaacttcctataccctcccccgccaaccctgctcaccaacccacccat
tccagcttcttgccctggaattcccttatactggggcatgaaactttcac
tggaccaagggcctctcttcccgttcatgatcagctaggccatcctctgc
tacacctgcagctggagccatgagtcccaccatgtgttttctttggttgg
gttgtttagtcccagggagctctggaggtactggttagttcatattgttg
ttcctcctatggggctgcaaaccccttcaactccttgatactttttctag
cttctttatggggacctgttgctccttccaatggatgctgtgagcatcca
ccttctgtatttgtcagcactggcagagcctcctcagaagacagcttaat
tcaggctccggtcatcagctctagt
gaattcttgtttctttgtttgtttgtgtttgttcgtttgtttgttttttg
gttttttgagacagggtttctctatgtagccctggctgtcctggaactca
ctctttagaccaggctggcctcgaactcagaaattcacctgcctctgcct
accaagtgctgggattaaaggcgtgctccaccacgcccagcagaactgtg
ggattcttaaaaaattggggagggatggccttttgggctctcctgctgac
tgttgtgtgtggaggaatgctttggtggatggcatgtatgcaaaggcggc
acagggctgataaatgagccttagtgcaggctatggcagccttggaagca
ggaatatccccccaatgttggctcaacatgctggattagtaatcaatgac
gggtaagaccctcacctgcgcataccaacctaagacaggatgtcaaaagt
gagttcttcactcccatgacaggtaaggatgtggcacggatgggggcaac
ctaagacagatgatgatcccagagctactaataaaacaaaaagggggaga
attggcatggataagaactttcctaacaggacatgacaatttgagaaaca
aaagcaaacctagacaagtggaatcacattaaactgaaagtatttcatgg
agaaaaggatataccaggtagagtataaaaccaacatacagaatgaaaga
aaaccattcattatcagtgactaatattaaaatattagtagactaaaggt
aggatgtgctggtgagagtgtgaagataggggaatgtttagaagtagaca
tgtatgttactaaagccattatggaaagtaatatggagttccataaatgt
ttaaactagactactcatgtgcctaagcaatttaactaggggatatagta
ttccccatcccaaaaataactagtggcattagaagacctttgcacttcta
tctttgctttagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81699771_81700896
seq2: B6Ng01-087K05.b_49_1173 (reverse)

seq1  ACTAGAGCTTGATGACCGGAGCCTG-ATTTAGCTGTCTCCTGA-GAGGCT  48
      |||||||| |||||||||||||||| ||| |||||||| |||| ||||||
seq2  ACTAGAGC-TGATGACCGGAGCCTGAATTAAGCTGTCTTCTGAGGAGGCT  49

seq1  CTGCCAGTGCCTGACAAATACAGAA-GTGGATGCTCACAGCCATCCATTG  97
      ||||||||| ||||||||||||||| |||||||||||||| |||||||||
seq2  CTGCCAGTG-CTGACAAATACAGAAGGTGGATGCTCACAG-CATCCATTG  97

seq1  GAAGGAGC-ACAGGTTCCCCAATAAAGGAGCTAGAAAAAGTATCCAAGGA  146
      |||||||| ||||||  ||| |||||| ||||||||||||||| ||||||
seq2  GAAGGAGCAACAGGT--CCCCATAAAGAAGCTAGAAAAAGTAT-CAAGGA  144

seq1  GTTGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAACCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAACCA  194

seq1  GTACCTCCAGAGCTCCCTGGGACTAAACAA-CCAACCAAAGAAAACACAT  245
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTACCTCCAGAGCTCCCTGGGACTAAACAACCCAACCAAAGAAAACACAT  244

seq1  GGTGGGACTCATGGCTCCAGCTGCAGGTGTAGCAGAGGATGGCCTAGCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACTCATGGCTCCAGCTGCAGGTGTAGCAGAGGATGGCCTAGCTG  294

seq1  ATCATGAACGGGAAGAGAGGCCCTTGGTCCAGTGAAAGTTTCATGCCCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAACGGGAAGAGAGGCCCTTGGTCCAGTGAAAGTTTCATGCCCCA  344

seq1  GTATAAGGGAATTCCAGGGCAAGAAGCTGGAATGGGTGGGTTGGTGAGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGGGAATTCCAGGGCAAGAAGCTGGAATGGGTGGGTTGGTGAGCA  394

seq1  GGGTTGGCGGGGGAGGGTATAGGAAGTTTTAGGAGGGGAAACCAGGAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGCGGGGGAGGGTATAGGAAGTTTTAGGAGGGGAAACCAGGAAAG  444

seq1  GGGATAACATTTGCAATGTAAATAAAGAAAATATCTAAAAAAAAATAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAACATTTGCAATGTAAATAAAGAAAATATCTAAAAAAAAATAAAA  494

seq1  TTTGGTATTATGTATTTGTTCAAATAGTTTCTGTGTTCAGAGTTCTTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATTATGTATTTGTTCAAATAGTTTCTGTGTTCAGAGTTCTTTAT  544

seq1  TCCTTTGTATAAAGCTGTGTATTTCCAGGCCTTGTGATTTTATCTTTGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTATAAAGCTGTGTATTTCCAGGCCTTGTGATTTTATCTTTGCC  594

seq1  TGGGGCCTGAACTTTAACTCTGATTTGTAAAAGCAGTATTATCTGTCATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGAACTTTAACTCTGATTTGTAAAAGCAGTATTATCTGTCATA  644

seq1  CTGTCAGGTGGATCCTTTTGTAGCTTTAGACTGCTTGCTCAAAACCCAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGTGGATCCTTTTGTAGCTTTAGACTGCTTGCTCAAAACCCAGC  694

seq1  TGACTAATCTCTGATAAAAACTTAAGAAGAGAATCTGTAGATTCCATTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATCTCTGATAAAAACTTAAGAAGAGAATCTGTAGATTCCATTTG  744

seq1  TGTCTCCTCTCTGGTATTCTAAGAACTCCCGCTTGTCTCCCTAGCTTTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCTCTGGTATTCTAAGAACTCCCGCTTGTCTCCCTAGCTTTCC  794

seq1  GTCCATCCCACATCGCACAGGTTCCACAGACATATACTCTCTCCTCACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCCACATCGCACAGGTTCCACAGACATATACTCTCTCCTCACAT  844

seq1  GATTGCTCTTGCATATCTGTCTGCAAGCGTTCCTCCACAGCTCAGCATCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTCTTGCATATCTGTCTGCAAGCGTTCCTCCACAGCTCAGCATCA  894

seq1  AATCCAACAGCTAAGCTATGGGCTTGATATTTGACACTGATATCAGAGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACAGCTAAGCTATGGGCTTGATATTTGACACTGATATCAGAGTA  944

seq1  ATTGTCCTGTCTGAGGTTTTCTCTCAGACTCCTCAAATAATCTTGTTCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTGTCTGAGGTTTTCTCTCAGACTCCTCAAATAATCTTGTTCTT  994

seq1  TCCTTTTCTGCTAATCCAGGTATAAGTGAAGAGCTCCCAAACACTTAAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTGCTAATCCAGGTATAAGTGAAGAGCTCCCAAACACTTAAGT  1044

seq1  GAAAGTGGTAATCCCGAGCATTCTGGAAGATCACTTCATTAGAAACAGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGTAATCCCGAGCATTCTGGAAGATCACTTCATTAGAAACAGGA  1094

seq1  TAGCTGTAGAGAGAACTGTGTAGAGGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  TAGCTGTAGAGAGAACTGTGTAGAGGAATTC  1125

seq1: chrY_248288_248459
seq2: B6Ng01-087K05.g_77_261

seq1  TTGTTTGTTTGTTTGTTTGTGCTTGTTTGTTTG--------------TTT  36
      |||||| |||||||||||||| ||||| |||||              |||
seq2  TTGTTTCTTTGTTTGTTTGTGTTTGTTCGTTTGTTTGTTTTTTGGTTTTT  50

seq1  CGAGATAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGT  86
       |||| ||||||||||| |||| ||||||||||||||||||||||| | |
seq2  TGAGACAGGGTTTCTCTATGTAGCCCTGGCTGTCCTGGAACTCACTCTTT  100

seq1  AGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAG  136
      |||||||||||||||||||||||||||| ||||||||||||| | |||||
seq2  AGACCAGGCTGGCCTCGAACTCAGAAATTCACCTGCCTCTGCCTACCAAG  150

seq1  TGCTGGGATTAAAGGAGTGCGCCACCACTGCCCAGC  172
      ||||||||||||||| |||| ||||||| |||||||
seq2  TGCTGGGATTAAAGGCGTGCTCCACCAC-GCCCAGC  185