BAC Information

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BAC

Clone NameB6Ng01-088G06
ChromosomeY (Build37)14 (Build37)
Map Location 573,321 - 573,38484,626,931 - 84,627,671
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G06.bB6Ng01-088G06.g
ACCDH901253DH901254
length4721,172
definitionDH901253|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G06, 5' end.DH901254|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,384)(84,626,931 - 84,627,671)
sequence
aatagtgtctggctttggtggctgattatgggatgattcctccggtgggt
ttgtctctggatggtccttcctttcatcttagctccaaactttgtctctg
taactccttccatgggtattttgttccctattctgaggattgaagtatcc
acacatttccttcttgattttcttatgttttgcaaactgtatcttgggta
ttctatgtttctgggctaatatccacttattagtgagtgcatatcaggtg
acttcttttgtgattgggttgcctcactatttcatatgccagcaagattt
tgctgaaaggaccctgttatagctgtctcctgtgaggcttcgccagtgtc
tggcaaatacagaagtggatactcacagtcatctacaggatggaatataa
ggtccccaatggaggagctatagaaagtacccaaggagctgaaggggtct
gcaaccctataggtggaacaac
gaattcataagactcatacaagagttctaaaagacatacagtcgatccat
ctatctatctattttaaatttctttaaaatctgttcttttattctttgag
atgatttggtttcagagctgaactttacttaaattcacttaaggtagaac
taaactaatgttagtcttattggggctgtagaaatgttaatgggaaataa
aagataaagcaaatacaagtataagatggaaaacttttaaataaatttgt
aaatgaatttttgcaacttatcaatataaatttaagaaagtctcgtgttt
atttagcacacatttgtacagttatgttggtgagatttgtatgcaagttt
tgatgttacttggggacacaatcacagggcaaactccttgatccttctgg
ctctgaccatcttccactactttttcttgaatattcctaaagacttaggt
gcagaaaagttttgtagatgtatccattgagcctggcttcacaactctac
attctgattggatgtgattttatatatttatctcactctgttgcaataag
cagttcccttgataagaattgaagaccacaattatctgtgagtataggaa
caactatttatagtcttttaacttattatacttttggtaatttagtggat
gtcagttgcttctactacaataagcatgacttcactagcactgagtagct
aattaggtaactagtactaagtatattcttcctattgatgagcaggtggc
aaatccaattaaagtagtgttggttaccaccaaggtgtgtgtaccattaa
tgcacccttaaggttatcatgctatgctcattattgatgtggttcttata
aactggatggagaaaagcactcaatgcctcaaccctaaacaaagaaatat
atgcactgagaaaagtaggaatgggatagtagctattccagggaggtgtg
ggaccatgaaagctgtggagagctgtgccatgagcatcgccatatagatg
gtgctggcttcactgcgctactagcaaacaagccttatgcccaagtgcag
agtgaattcacgctagtcactgtcatctgccgcatagaatggggtggatg
ggccagcaacaatagaccgttcacacccatcaggggctgaacgtcaagct
gcgggctatttagcgcgccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573384
seq2: B6Ng01-088G06.b_455_518

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||| ||||||||||||||||||| ||||| ||||||| |||
seq2  ATGGAGGAGCTATAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAAC  64
      |||| |||||||||
seq2  ATAGGTGGAACAAC  64

seq1: chr14_84626931_84627671
seq2: B6Ng01-088G06.g_526_1241 (reverse)

seq1  AATGGCGCTGCTTATATAGCCCGCAGCTTGACGTTTCAGCACCTGATGTG  50
      |||||||| || || |||||||||||||||||| |||||| ||||||| |
seq2  AATGGCGC-GC-TAAATAGCCCGCAGCTTGACG-TTCAGCCCCTGATG-G  46

seq1  GTGTGACAGCTCCTGATTTGTTGCTCGCCCAT-CACCCCATTACTATGCC  99
      ||||||  | ||     |||||||| |||||| ||||||||| ||||| |
seq2  GTGTGAACGGTC---TATTGTTGCTGGCCCATCCACCCCATT-CTATG-C  91

seq1  GCCAGATGGACAGTGACTAGGCGTGAATTCACTCTTGCACTTGCGCATAA  149
      | ||||| ||||||||||| |||||||||||||| |||||||| ||||||
seq2  GGCAGAT-GACAGTGACTA-GCGTGAATTCACTC-TGCACTTGGGCATAA  138

seq1  GGCTTGTTTGCTAGTTAGGCGCAGTGGAAGCCAGCACCATCTTATAATGG  199
      |||||||||||||||   ||||||| ||||||||||||||| ||| ||||
seq2  GGCTTGTTTGCTAGT--AGCGCAGT-GAAGCCAGCACCATC-TAT-ATGG  183

seq1  CGATTGCTCATGGCACAGCTCTCCACAGCCTTTCATGGTCCCACACCCTT  249
      ||| |||||||||||||||||||||||| ||||||||||||||||||  |
seq2  CGA-TGCTCATGGCACAGCTCTCCACAG-CTTTCATGGTCCCACACC--T  229

seq1  CCCTGGAAATAGCTACCTATCCCATTCCTACTTTTTCTCAGTTGCATATA  299
      |||||| |||||||| ||||||||||||||| ||||||||| ||||||||
seq2  CCCTGG-AATAGCTA-CTATCCCATTCCTAC-TTTTCTCAG-TGCATATA  275

seq1  TTTCTTTGTTTAGGGTTGAGGCATTGAGTGCTTTTCTCCATCCAGTTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCTTTGTTTAGGGTTGAGGCATTGAGTGCTTTTCTCCATCCAG-TTTA  324

seq1  TAAGAACCACATCAATAATGAGCATAGCATGATAACCTTAAGGGTGCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACCACATCAATAATGAGCATAGCATGATAACCTTAAGGGTGCATT  374

seq1  AATGGTACACACACCTTGGTGGTAACCAACACTACTTTAATTGGATTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACACACACCTTGGTGGTAACCAACACTACTTTAATTGGATTTGC  424

seq1  CACCTGCTCATCAATAGGAAGAATATACTTAGTACTAGTTACCTAATTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCATCAATAGGAAGAATATACTTAGTACTAGTTACCTAATTAG  474

seq1  CTACTCAGTGCTAGTGAAGTCATGCTTATTGTAGTAGAAGCAACTGACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGTGCTAGTGAAGTCATGCTTATTGTAGTAGAAGCAACTGACAT  524

seq1  CCACTAAATTACCAAAAGTATAATAAGTTAAAAGACTATAAATAGTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAATTACCAAAAGTATAATAAGTTAAAAGACTATAAATAGTTGTT  574

seq1  CCTATACTCACAGATAATTGTGGTCTTCAATTCTTATCAAGGGAACTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACTCACAGATAATTGTGGTCTTCAATTCTTATCAAGGGAACTGCT  624

seq1  TATTGCAACAGAGTGAGATAAATATATAAAATCACATCCAATCAGAATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAACAGAGTGAGATAAATATATAAAATCACATCCAATCAGAATGT  674

seq1  AGAGTTGTGAAGCCAGGCTCAATGGATACATCTACAAAACTT  741
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTGAAGCCAGGCTCAATGGATACATCTACAAAACTT  716