BAC Information

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BAC

Clone NameB6Ng01-088G18
ChromosomeX (Build37)Y (Build37)
Map Location 127,190,556 - 127,191,5961,120,587 - 1,120,826
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDiap2, LOC100040092, LOC665773
Downstream geneLOC665799, LOC670449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G18.bB6Ng01-088G18.g
ACCDH901276DH901277
length1,170321
definitionDH901276|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G18, 5' end.DH901277|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,190,556 - 127,191,596)(1,120,587 - 1,120,826)
sequence
gaattcagttctcagcacccattgtagctgaacttttacctactttatgg
tttcctatttctaccacccttctctacccttatctcttccaaggccccaa
cacttggtaggggaaaagagaactataggggaaagggggcatcaatattg
ttaaactacttactgctgattagggacatcaggttccttgggagaaattt
tgatattcaccaacaggatatctccgactagcaaccagtaaccagcaacc
cgcaattagcaacagctgcagcagcagtaatagcagaggcagcagcagta
ggagaagcaactgctgctgcctctcttggagctctggcctctgaagagtc
ctcagaatttcaaatgtaaactctctttagctgtcagaatcatgcccctg
ccagagcataagacaaatcatggctgctgtgaactatctgaagcagctcc
atattccacatctgggattcaaataaaacatattcacataacatttctgt
gtttttaaagaaacaaaaattctcactgccacccacattatgcagtttat
aaccagttgtgactatgtccaacagtcctcttctggactctgtggtcact
tgcaattatatctttacatacccacatatacatgtaatcaaaaataatat
actttcaatgagttcatgtaaagcctcaatgattgacattcatccatacc
tccagtttcagaggatcctattccctcttcttaactctgcagacaccaga
tgtatgcatgtgggatacagacatatatccaggtaaagcacctatagtca
taacatacaaatgaataagtataattttaaaaattgagccaatgtatatg
agtataattaaggtgagatggtaatatagaagtgacaatgacagtgccat
tcattgtccattctctttttctataacagaatgttggggcctgaaaaact
tgcaaagaaagagtttcactcgcagatactttttaccaatgcttactgct
gttttgtttacactagccaggaataaaacacctaaatgtctctcactaag
aatggatacggatatgtgttaaatattaacaatggaggactattagctgt
taagaaagtgaacatgcattgcagttaatgggtcactagaaaagaacatt
gaggtgaggtagctgaaaat
ctgttctttccaagacttttatcatgaatgggtgttggattttctcaaat
attttctctgcatctaacaaaatgatcatgtggtttttttcccatttttt
attaggtatttagctcatttacatttccaatgctatactaaaagtccccc
atacccacccacccccactcccctacccgcccactccccctttttggccc
tggcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcct
ctttcccgtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagttccggggtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_127190556_127191596
seq2: B6Ng01-088G18.b_195_1217

seq1  TTGTTAAACTACTTACTGCTGATTAGGGACATCAGGTTCCTTGGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAACTACTTACTGCTGATTAGGGACATCAGGTTCCTTGGGAGAAA  50

seq1  TTTTGATATTCACCAACAGGATATCTCCGACTAGCAACCAGTAACCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATTCACCAACAGGATATCTCCGACTAGCAACCAGTAACCAGCA  100

seq1  ACCCGCAATTAGCAACAGCTGCAGCAGCAGTAATAGCAGAGGCAGCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCAATTAGCAACAGCTGCAGCAGCAGTAATAGCAGAGGCAGCAGCA  150

seq1  GTAGGAGAAGCAACTGCTGCTGCCTCTCTTGGAGCTCTGGCCTCTGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGAAGCAACTGCTGCTGCCTCTCTTGGAGCTCTGGCCTCTGAAGA  200

seq1  GTCCTCAGAATTTCAAATGTAAACTCTCTTTAGCTGTCAGAATCATGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGAATTTCAAATGTAAACTCTCTTTAGCTGTCAGAATCATGCCC  250

seq1  CTGCCAGAGCATAAGACAAATCATGGCTGCTGTGAACTATCTGAAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGCATAAGACAAATCATGGCTGCTGTGAACTATCTGAAGCAGC  300

seq1  TCCATATTCCACATCTGGGATTCAAATAAAACATATTCACATAACATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTCCACATCTGGGATTCAAATAAAACATATTCACATAACATTTC  350

seq1  TGTGTTTTTAAAGAAACAAAAATTCTCACTGCCACCCACATTATGCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTAAAGAAACAAAAATTCTCACTGCCACCCACATTATGCAGTT  400

seq1  TATAACCAGTTGTGACTATGTCCAACAGTCCTCTTCTGGACTCTGTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCAGTTGTGACTATGTCCAACAGTCCTCTTCTGGACTCTGTGGTC  450

seq1  ACTTGCAATTATATCTTTACATACCCACATATACATGTAATCAAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAATTATATCTTTACATACCCACATATACATGTAATCAAAAATAA  500

seq1  TATACTTTCAATGAGTTCATGTAAAGCCTCAATGATTGACATTCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTCAATGAGTTCATGTAAAGCCTCAATGATTGACATTCATCCAT  550

seq1  ACCTCCAGTTTCAGAGGATCCTATTCCCTCTTCTTAACTCTGCAGACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTTTCAGAGGATCCTATTCCCTCTTCTTAACTCTGCAGACACC  600

seq1  AGATGTATGCATGTGGGATACAGACATATATCCAGGTAAAGCACCTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATGCATGTGGGATACAGACATATATCCAGGTAAAGCACCTATAG  650

seq1  TCATAACATACAAATGAATAAGTATAATTTTAAAAATTGAGCCAATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACATACAAATGAATAAGTATAATTTTAAAAATTGAGCCAATGTAT  700

seq1  ATGAGTATAATTAAGGTGAGATGGTAATATAGAAGTGACAATGACAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATAATTAAGGTGAGATGGTAATATAGAAGTGACAATGACAGTGC  750

seq1  CATTCATTGTCCATTCTCTTTTTCTATAACAGAATGTTGGGGCCTGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTGTCCATTCTCTTTTTCTATAACAGAATGTTGGGGCCTGAAAA  800

seq1  ACTTGCAAAGAAAAGAGGTTTCACTCCGCAGATACTTTTTACCAATGCTT  850
      |||||||||| ||||| |||||||| ||||||||||||||||||||||||
seq2  ACTTGCAAAG-AAAGA-GTTTCACT-CGCAGATACTTTTTACCAATGCTT  847

seq1  ACTGCTGTTTTGTTTACACTAGCCAGGAAATAAAACAACCTAAATGTCTC  900
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  ACTGCTGTTTTGTTTACACTAGCCAGG-AATAAAAC-ACCTAAATGTCTC  895

seq1  TCAACTAAAGAATGGATACGGAATATGTGGTACATATAAACAATGGAGTA  950
      || ||| |||||||||||||| ||||||| || |||| |||||||||| |
seq2  TC-ACT-AAGAATGGATACGG-ATATGTGTTAAATATTAACAATGGAGGA  942

seq1  CTAATAAGCTGTAAAGAAAAGTGAAACACAGCATTTGCAGGTAAATGGGT  1000
      || || |||||| ||| |||||| ||||  ||| ||||| || |||||||
seq2  CT-ATTAGCTGTTAAG-AAAGTG-AACA-TGCA-TTGCA-GTTAATGGGT  986

seq1  ACAACTAGAAAAGATCATATTGA-GTGAGGTAGCTGAGAAAT  1041
         |||||||||||  | ||||| ||||||||||||| ||||
seq2  --CACTAGAAAAGA--ACATTGAGGTGAGGTAGCTGA-AAAT  1023

seq1: chrY_1120587_1120826
seq2: B6Ng01-088G18.g_155_392

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTTTTTCCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGC  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  100
      ||||| |||||||||||||| |||||||||||||||||||| ||| ||||
seq2  TATACTAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCCA  100

seq1  CTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTT  150
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  CTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTT  150

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  200
      ||  |||||||||||  |||||||| ||||||||||||||||||||||||
seq2  GCGTGTCCAATGGGC--CTCTTTCCCGTGATGGCCGACTAGGCCATCTTT  198

seq1  TGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  240
      ||||||||||||||||||||||||||| ||||||||||||
seq2  TGATATATATGCAGCTAGAGTCAAGAGTTCCGGGGTACTG  238