BAC Information

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BAC

Clone NameB6Ng01-088M21
Chromosome1 (Build37)Y (Build37)
Map Location 55,978,471 - 55,979,606573,321 - 573,550
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnkrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream gene9130227L01Rik, Hsfy2, Satb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088M21.bB6Ng01-088M21.g
ACCDH901560DH901561
length1,115464
definitionDH901560|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M21, 5' end.DH901561|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,978,471 - 55,979,606)(573,321 - 573,550)
sequence
gaattcaataacagctgtaaagccctttgtaagatgccaaagatactaca
ttgggacttaacaatatataacattttacaatatggaaaaatatgaatgg
acagttttgtgtttacctccattataatgtattttatgcaagaatgtgta
tcatgcaagcatgctatccttgatggatcatcaaagagttcaggtttgta
ctgcttttctctttcatttgtagagtggagaaatagaaatagatatggga
tatgccagaggaaatgacctcaaagagacagctaccttacgtgtcccaac
atctgaattatgaattaaatacatttgaagcagacttaacatcaaaacca
ggaattgccaggtgggcttttccctgggagactcttatcgacgagcacag
gagctgcttacagtagaagtattatgaagacttaggacttgattattata
ctagaatttggtgcttaataaaagggatgtagttaattctctgtcagtgc
agaagggagttcttgcctcacctcccccttctcctgctatcctagctccc
cacccccattttattgctccattcttggaggtctgctttggaatgaagcc
agttgtctttttcttcttttcacttagacaaattttacatcaaaatactg
attttatatttgaggaaactggtggcttatggaatagtacccatgtcagc
ttttatatgaatgtgcatgaagtttcaaaagccaaatggtaagggatctg
tgacaaacagcagtcctttgcctggaagacccctgcctcgcccactgctc
tggctggctgctttcagagagcttgcagcttgctgacttcctggcattca
tcttccattcaaaatgagtaacatagcacaggcgctcccttcccctctca
gggttagtgtcactgattccccgtgcggaagataggagtttaacgctttc
atgtctttcctgcccaacatcattcctaggagtttctcagctgcacttta
aaaagggtctagaaagatgctcttgagtgtttcagtactgaaacctttcc
gagaattagggacaagtggaatatttttcttcttgtaaattatcttacat
atctgcttaatgcag
aagaagttagacatcaacaagcccaaataacccaacttaaaaatggggta
tagaactaaacagaaaatctctacagaagaatctcaaatggccaagaagc
acttaatgagatgttccaagtccttaggcaccaggaaaatgcaaattcaa
acaactctgagattctattttacacccatcacacagaagtggatgctcac
agtcagctattggttggaacacggggcccccaatggaggagctagagaaa
ttacccaaggagctgaaggggtctgcaaccctataggtggaacaacaata
tgaactaaccagtatccccagagcttgtgtctctagttgcatttttagca
gaaggtggcttagtcggccatcattgggaagagagaccccttggtcttgc
aaactttatatgccccagtacaggggaaacaccagggccaagaagttgga
gtgggtgggtaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_55978471_55979606
seq2: B6Ng01-088M21.b_48_1162

seq1  GAATTCAATAACAGCTGTAAAGCCCTTTGTAAGATGCCAAAGATACTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACAGCTGTAAAGCCCTTTGTAAGATGCCAAAGATACTACA  50

seq1  TTGGGACTTAACAATATATAACATTTTACAATATGGAAAAATATGAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTTAACAATATATAACATTTTACAATATGGAAAAATATGAATGG  100

seq1  ACAGTTTTGTGTTTACCTCCATTATAATGTATTTTATGCAAGAATGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGTGTTTACCTCCATTATAATGTATTTTATGCAAGAATGTGTA  150

seq1  TCATGCAAGCATGCTATCCTTGATGGATCATCAAAGAGTTCAGGTTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAGCATGCTATCCTTGATGGATCATCAAAGAGTTCAGGTTTGTA  200

seq1  CTGCTTTTCTCTTTCATTTGTAGAGTGGAGAAATAGAAATAGATATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCTCTTTCATTTGTAGAGTGGAGAAATAGAAATAGATATGGGA  250

seq1  TATGCCAGAGGAAATGACCTCAAAGAGACAGCTACCTTACGTGTCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGAGGAAATGACCTCAAAGAGACAGCTACCTTACGTGTCCCAAC  300

seq1  ATCTGAATTATGAATTAAATACATTTGAAGCAGACTTAACATCAAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTATGAATTAAATACATTTGAAGCAGACTTAACATCAAAACCA  350

seq1  GGAATTGCCAGGTGGGCTTTTCCCTGGGAGACTCTTATCGACGAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGCCAGGTGGGCTTTTCCCTGGGAGACTCTTATCGACGAGCACAG  400

seq1  GAGCTGCTTACAGTAGAAGTATTATGAAGACTTAGGACTTGATTATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTACAGTAGAAGTATTATGAAGACTTAGGACTTGATTATTATA  450

seq1  CTAGAATTTGGTGCTTAATAAAAGGGATGTAGTTAATTCTCTGTCAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTGGTGCTTAATAAAAGGGATGTAGTTAATTCTCTGTCAGTGC  500

seq1  AGAAGGGAGTTCTTGCCTCACCTCCCCCTTCTCCTGCTATCCTAGCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAGTTCTTGCCTCACCTCCCCCTTCTCCTGCTATCCTAGCTCCC  550

seq1  CACCCCCATTTTATTGCTCCATTCTTGGAGGTCTGCTTTGGAATGAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCATTTTATTGCTCCATTCTTGGAGGTCTGCTTTGGAATGAAGCC  600

seq1  AGTTGTCTTTTTCTTCTTTTCACTTAGACAAATTTTACATCAAAATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTTTTTCTTCTTTTCACTTAGACAAATTTTACATCAAAATACTG  650

seq1  ATTTTATATTTGAGGAAACTGGTGGCTTATGGAATAGTACCCATGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATTTGAGGAAACTGGTGGCTTATGGAATAGTACCCATGTCAGC  700

seq1  TTTTATATGAATGTGCATGAAGTTTCAAAAGCCAAATGGTAAGGGATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGAATGTGCATGAAGTTTCAAAAGCCAAATGGTAAGGGATCTG  750

seq1  TGACAAACAGCAGTCCTTTGCCTGGAAGACCCCTGCCTCGCCCACTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACAGCAGTCCTTTGCCTGGAAGACCCCTGCCTCGCCCACTGCTC  800

seq1  TGGCTGGCTGCTTTCAGAGAGCTTGCAGCTTGCTGACTTCCTGGCATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCTGCTTTCAGAGAGCTTGCAGCTTGCTGACTTCCTGGCATTCA  850

seq1  TCTTCCATTCAAAATGAGTAACATAGCACAGGCGCTCCCTTCCCCTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTCAAAATGAGTAACATAGCACAGGCGCTCCCTTCCCCTCTCA  900

seq1  GGGTTAGTGTCACTGATTTCCCCGTGCGGAAGATAGGAGTTTAACGCTTT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGTTAGTGTCACTGA-TTCCCCGTGCGGAAGATAGGAGTTTAACGCTTT  949

seq1  CATGTCTTTTCCTGCCCAACATCATTCCTAGGAAGTTTCTTCAGCTGCAA  1000
      |||||| ||||||||||||||||||||||||| |||||| ||||||||| 
seq2  CATGTC-TTTCCTGCCCAACATCATTCCTAGG-AGTTTC-TCAGCTGCA-  995

seq1  CCTTTTAAAAAAGGGTCTAAGAAAGAATGCTCTTGAAGTGTTTCAGTAAC  1050
       ||||  ||||||||||| |||||| ||||||||| ||||||||||| ||
seq2  -CTTT--AAAAAGGGTCT-AGAAAG-ATGCTCTTG-AGTGTTTCAGT-AC  1038

seq1  TGAAACCCTTCCCGAGAATTTAGGGAACAAGTTGAAATATTTTTCTTCCT  1100
      ||||| |||| ||||||| |||||| ||||| || |||||||||||||  
seq2  TGAAA-CCTTTCCGAGAA-TTAGGG-ACAAG-TGGAATATTTTTCTTC--  1082

seq1  ATGTACAATTATCTTACATAATCTGCTTAAGTGCAG  1136
       |||| ||||||||||||| |||||||||| |||||
seq2  TTGTA-AATTATCTTACAT-ATCTGCTTAA-TGCAG  1115

seq1: chrY_573321_573550
seq2: B6Ng01-088M21.g_307_538

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||| ||||||||||||| ||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAATTACCCAAGGAGCTGAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| ||||||||||||||||| |||||||||||| |||||||  |||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTATCCCCAGAGCTTGTGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      |||| ||||| | || |||||| |||| |||| |||||||||||||||||
seq2  CTAGTTGCATTTTTAGCAGAAGGTGGCTTAGTCGGCCATCATTGGGAAGA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGG-AACAC  198
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGACCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAAACAC  200

seq1  CAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGG  230
      |||||||||||||| ||||  |||||||||||
seq2  CAGGGCCAAGAAGTTGGAGTGGGTGGGTAGGG  232