BAC Information

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BAC

Clone NameB6Ng01-088N14
Chromosome1 (Build37)Y (Build37)
Map Location 138,726,200 - 138,727,7841,870,346 - 1,870,429
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818
Downstream geneNr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N14.bB6Ng01-088N14.g
ACCDH901592DH901593
length1,221494
definitionDH901592|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N14, 5' end.DH901593|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(138,726,200 - 138,727,784)(1,870,346 - 1,870,429)
sequence
gaattccatctttcttctccttccctagataaacaggcagccatcacacc
tacctggcttttacatgggtcctggggctctacccactgaaccatctccc
caggtacatattacttcattttggaaacatgatccaccagtaaagttgga
gctcacctctttggcaaggctggtgagccagcagactctgggtatctgtt
cagtctctgttctccagtccagagtcatgggcccaagctgtcatgcctgg
cttttaagtgggtgctggaagttcccaactcatgtacagaaagtgttgtc
tcaactacgctatcttcctagctgggtctgactttttataagctttgttg
cttcagaaagtacaccaggtacctagagagaggaagtgagctgtgggaag
aaaaggaaagattgctatctctgggcattggggccggggctagaaccatt
gctgtctttactcccgatgatagaatggcaaatacagttactttcctgtg
cccaagaagagtacatgtctggaattgtccaggcaaagacatcaaggaga
attagcaacccaggagcaaccaagacggcagctgacttgatgatattgac
aaccaccttgagcatttatggtcttcactcactccttgaacctgtggttt
ctctggggggtgttaacagatgcacaagtgatgaatgtgcccctgtgttg
gcaaaccctctgccactctctttccctacacactcaactgaagttgaaaa
agagacattctcacctgtcttagttaggattttactgctgtgaagagaca
ccatgaccaagacaagtcttataaaggacaacatttaattgggctggctt
acaggttcagagattcagtgcatcatcatcaaggtaggagcaaggcagca
tctagacaggcatgattcagcagggctgagagttctaaatcttcatctga
aggcggctagtggaagacggactcccatgaagctaggacaggtaattaaa
gcccgcacccacaaggcacacttactgcaacaaggcaccactccacagtg
ccacactctgggccagcataaacaacaatcacaccacctatgccagtggt
gccacagcctcctgccccctgcattgatgaggtgacaggctactttcatt
cagcttcttggaaatacctatgtaagacatatagcaagacctgcatttgt
ctggaaatccaggaccaaccg
gaattcacatgatatgtactcactgataagtggatattagcccagaaact
tagattacctatgatacaagatacaatttgcaaaacacatgaaactcaag
aagaatgaagaccaaagtgtggacactttgccccttcttagaattaagaa
caaaacacccatggaaggagttattgagacaacgtttggagctgggacga
aaggatggaccatctagagactgccacacctggggatccagcccataatc
agcctccaaacgcttacaccattgcataaaccagcaagattttactgaaa
ggaccctgatagagctgtctcttgtgaggctatgccggtgccttgcaaac
acagaagtggatgctcacagtcagctattggatggaaaacagggccccca
atggaagagctagagaaagtacccaaggagctaaaggggtctgcaaccct
ataggtggaacaacattatgaactaaccagtacccccggagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138726200_138727784
seq2: B6Ng01-088N14.b_47_1267

seq1  GAATTCCATCTTTCTTCTCCTTCCCTAGATAAACAGGCAGCCATCACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTTCTTCTCCTTCCCTAGATAAACAGGCAGCCATCACACC  50

seq1  TACCTGGCTTTTACATGGGTCCTGGGGCTCTACCCACTGAACCATCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCTTTTACATGGGTCCTGGGGCTCTACCCACTGAACCATCTCCC  100

seq1  CAGGTACATATTACTTCATTTTGGAAACATGATCCACCAGTAAAGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACATATTACTTCATTTTGGAAACATGATCCACCAGTAAAGTTGGA  150

seq1  GCTCACCTCTTTGGCAAGGCTGGTGAGCCAGCAGACTCTGGGTATCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTCTTTGGCAAGGCTGGTGAGCCAGCAGACTCTGGGTATCTGTT  200

seq1  CAGTCTCTGTTCTCCAGTCCAGAGTCATGGGCCCAAGCTGTCATGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGTTCTCCAGTCCAGAGTCATGGGCCCAAGCTGTCATGCCTGG  250

seq1  CTTTTAAGTGGGTGCTGGAAGTTCCCAACTCATGTACAGAAAGTGTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGTGGGTGCTGGAAGTTCCCAACTCATGTACAGAAAGTGTTGTC  300

seq1  TCAACTACGCTATCTTCCTAGCTGGGTCTGACTTTTTATAAGCTTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTACGCTATCTTCCTAGCTGGGTCTGACTTTTTATAAGCTTTGTTG  350

seq1  CTTCAGAAAGTACACCAGGTACCTAGAGAGAGGAAGTGAGCTGTGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAAGTACACCAGGTACCTAGAGAGAGGAAGTGAGCTGTGGGAAG  400

seq1  AAAAGGAAAGATTGCTATCTCTGGGCATTGGGGCCGGGGCTAGAACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGATTGCTATCTCTGGGCATTGGGGCCGGGGCTAGAACCATT  450

seq1  GCTGTCTTTACTCCCGATGATAGAATGGCAAATACAGTTACTTTCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTTACTCCCGATGATAGAATGGCAAATACAGTTACTTTCCTGTG  500

seq1  CCCAAGAAGAGTACATGTCTGGAATTGTCCAGGCAAAGACATCAAGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAGAGTACATGTCTGGAATTGTCCAGGCAAAGACATCAAGGAGA  550

seq1  ATTAGCAACCCAGGAGCAACCAAGACGGCAGCTGACTTGATGATATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAACCCAGGAGCAACCAAGACGGCAGCTGACTTGATGATATTGAC  600

seq1  AACCACCTTGAGCATTTATGGTCTTCACTCACTCCTTGAACCTGTGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTTGAGCATTTATGGTCTTCACTCACTCCTTGAACCTGTGGTTT  650

seq1  CTCTGGGGGGTGTTAACAGATGCACAAGTGATGAATGTGCCCCTGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGGTGTTAACAGATGCACAAGTGATGAATGTGCCCCTGTGTTG  700

seq1  GCAAACCCTCTGCCACTCTCTTTCCCTACACACTCAACTGAAGTTGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCTCTGCCACTCTCTTTCCCTACACACTCAACTGAAGTTGAAAA  750

seq1  AGAGACATTCTCACCTGTCTTAGTTAGGATTTTACTGCTGTGAAGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATTCTCACCTGTCTTAGTTAGGATTTTACTGCTGTGAAGAGACA  800

seq1  CCATGACCAAGACAAGTCTTATAAAGGACAACATTTAATTGGGCTGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAAGACAAGTCTTATAAAGGACAACATTTAATTGGGCTGGCTT  850

seq1  ACAGGTTCAGAGATTCAGTGCATCATCATCAAGGTAGGAGCAAGGCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAGATTCAGTGCATCATCATCAAGGTAGGAGCAAGGCAGCA  900

seq1  TCTAGACAGGCATGATTCAGGCAGGGCTGAGAGTTCTAAATCTTCATCTG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTAGACAGGCATGATTCA-GCAGGGCTGAGAGTTCTAAATCTTCATCTG  949

seq1  AAGGCGGCTAGTGGAAGACGGACTCCCATGAAGCTAGGACAAGGTAATTA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGGCGGCTAGTGGAAGACGGACTCCCATGAAGCTAGGAC-AGGTAATTA  998

seq1  AAGCCCGCACCCACAAGGGCACACCTACTGCAACAAGGCCACACCTCCCA  1050
      |||||||||||||||| ||||||| |||||||||||||   |||| | | 
seq2  AAGCCCGCACCCACAA-GGCACACTTACTGCAACAAGG---CACCACTCC  1044

seq1  ACAGTGCCACACTCTGGGCCAAGCATAAACAAACCATCACACCACCTATG  1100
      |||||||||||||||||||| ||||||||| ||| |||||||||||||||
seq2  ACAGTGCCACACTCTGGGCC-AGCATAAAC-AACAATCACACCACCTATG  1092

seq1  CCAGTGGTGCCACAAGGCCTCCCTTGCCCCCCTGCATTGATGAGGTGACA  1150
      ||||||||||||||  ||||||  || |||||||||||||||||||||||
seq2  CCAGTGGTGCCACA--GCCTCC--TG-CCCCCTGCATTGATGAGGTGACA  1137

seq1  AGTGCTACTTTCCATTCCCAGCCTCTTGAGAAATACCTAATGGAGAGACA  1200
         |||||||| ||||  |||| ||||| ||||||||| ||| | |||| 
seq2  --GGCTACTTT-CATT--CAGCTTCTTG-GAAATACCT-ATGTA-AGAC-  1178

seq1  AAAGAGGGCACAGACCTGCATTTTGTCCTGAGAGTTCAGGAGCAAAC-AG  1249
        | |  ||| ||||||||| ||||| |||  | | ||||| ||| |   
seq2  --ATATAGCA-AGACCTGCA-TTTGT-CTGGAAATCCAGGACCAACCG--  1221

seq1  ATTATTTACAGGGAGTGTTTTCTCCTTACAAAATAAGCAGGCTTTGGGGC  1299
                                                        
seq2  --------------------------------------------------  1221

seq1  TCCCCATTCCCAGGCCCTCGTGTTCAAACCCAAATATGAGTTAAATATGT  1349
                                                        
seq2  --------------------------------------------------  1221

seq1  ACAGTGCCACGTTTCCTTGAAGTCTCCTTTTCTTAAGGCTCCAGCATGCG  1399
                                                        
seq2  --------------------------------------------------  1221

seq1  CCCTCTCTTGTGCTGGGCTTCCTCTGGTATCTTTGTGTCTGTGATGAGGC  1449
                                                        
seq2  --------------------------------------------------  1221

seq1  TTTTGTTGCATATCAGACTATATTTGGGGACATTTTCTGCAGTGCTGGGA  1499
                                                        
seq2  --------------------------------------------------  1221

seq1  AAACAGGAAATGGCCATCTTTGTGGACTGTGAGTCAAAGTGGAGATGGAA  1549
                                                        
seq2  --------------------------------------------------  1221

seq1  AACCCCTTCTCGGGACGCTCACAACAGGACCAACCG  1585
                                          
seq2  ------------------------------------  1221

seq1: chrY_1870346_1870429
seq2: B6Ng01-088N14.g_479_563

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTA-CCCCTGAGCTC  84
      |||||||||||||||||||| || |||| ||||||
seq2  ACAACATTATGAACTAACCAGTACCCCCGGAGCTC  85