BAC Information

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BAC

Clone NameB6Ng01-089H15
Chromosome9 (Build37)Y (Build37)
Map Location 81,765,336 - 81,766,5192,652,627 - 2,652,692
singlet/doubletsingletsinglet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089H15.bB6Ng01-089H15.g
ACCDH902044DH902045
length1,170936
definitionDH902044|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H15, 5' end.DH902045|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,765,336 - 81,766,519)(2,652,627 - 2,652,692)
sequence
gaattcattccttatttcatttctgattagaaagctttcaccttggcaga
actctggacaataaaccctcttatatttaacacatgctttagtttagttg
taatgaatagaataatagaacagcttattagaaactgattttgatggttg
gtgagagagatgtaacattcttaatttttagtatggtagagcatgtattt
aaaaggcctcttcttttcctgtgtcatcctgcttacaggaatacctgtca
ttgcaagatgaaaaacccaaccaaaccttacttcacaccccacagtggtg
actgtttaatccttctcagaacaatggcaggataaacgtactgttccttc
ttcactaatagcatccctgaccagaggcttatcgtccattttctgtttgt
aatttgtttattttcttattctactaattctattgtctcctcttcagatt
aaaagcccagagggaaggaacgtctgtgtctctatagtgtctggtacaac
caattactgattctgaatgcttactgacaatataagactgtttaatattc
tgcttttctataacagtgcatagaatatttaacatagttatggaaacatt
actgcttcccagaactgtatttgtctgatagctatatcctaaataatcca
ttattatgcaagttttatcttttaaaacattcatgactttcatccattaa
tctgatgattaataatatctattgcaactaagatatatatatatatatcc
tagtttgtatatcctagtatatcatatttgcataatatatattatatata
tttgtatatactatgtgaataccagtaggtacagggcagatagcatatgg
aacaactggtccttcattgaaggtcactgttaaaagaatggtcatactag
caaaaaacaggttgccagcctgtcctgaaaaagatggctgttgctaaaat
caatcatattgtcagcctcccatttttccctcggggatagtaacctttag
tttcagtaaagggttagaaaccattggaaaattaaaagtccgagtttgtg
agtttatttaatctgattcctctaaccttttacttcagtcctttttagta
tgtgtttctgactggggctgacccttatggacccgtaggttggagttcac
cttgagcttcttcttctcct
gaattctccaaaaggcaggttttgttgtgcaaatcttgctctttaattta
aaactattggtgactaaggaagcctacaacttgtagctgggcattagtga
ggtaggaggtaggcagagggcttcaggtcctggatttagggtctgaggca
gaaaccactggagaaggagaagaggaaggaagaagatgccatggggtaga
tggatgaggaccagcgagttggagagggagtggcccaggcagaacatagc
aaatgatatctcagggttagcgaaaggaaaataggcaaaatagcataaag
gactgatatctgcccagctctagtgctttaaggcttgttatagatataga
ggattttgacttttgagaactaaattatttaagtggtgttgggagccgcg
cccacattcgccgttacaagatggcgctgacagctgtgttctaagtggta
aacaaataatctgcgcatgtgccgagggtgtgctctgccttccccgtgac
gtcaactcggccgatgggctgcagccaatcagggagtgacacgtcctagg
cgaaatataactctcctaaaaaagggacggggtttcgttttctctcgctc
ttgcttcttacactcttgctcctgaagatgtaagcaataaagctttgccg
cagaagattctggtctgtggtgttcttcctggccgggcgtgagaacgcgt
ctaataacaattggtgccgaatttccgggacgagaaaaaactcgggactg
gcgcaagaaagatctcctcattccagaaccagaactgcgggtcgcggtta
tgaagtgttcccacaacacagactgtttagaaggatttcaactgtatgaa
ttcagaacttttcagcttggggaacgagagtaccagtgagtacagcttta
cgaggtagtctgaccttgaacttctaggaaatcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81765336_81766519
seq2: B6Ng01-089H15.b_43_1212

seq1  GAATTCATTCCTTATTTCATTTCTGATTAGATTGCTTTCACCTTGGCAGA  50
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCATTCCTTATTTCATTTCTGATTAGAAAGCTTTCACCTTGGCAGA  50

seq1  ACTCTGGACAATAAACCCTCTTATATTTAACACATGCTTTAGTTTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACAATAAACCCTCTTATATTTAACACATGCTTTAGTTTAGTTG  100

seq1  TAATGAATAGAATAATAGAACAGCTTATTAGAAACTGATTTTGATGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATAGAATAATAGAACAGCTTATTAGAAACTGATTTTGATGGTTG  150

seq1  GTGAGAGAGATGTAACATTCTTAATTTTTAGTATGGTAGAGCATGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGATGTAACATTCTTAATTTTTAGTATGGTAGAGCATGTATTT  200

seq1  AAAAGGCCTCTTCTTTTCCTGTGTCATCCTGCTTACAGGAATACCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCTCTTCTTTTCCTGTGTCATCCTGCTTACAGGAATACCTGTCA  250

seq1  TTGCAAGATGAAAAACCCAACCAAACCTTACTTCACACCCCACAGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGATGAAAAACCCAACCAAACCTTACTTCACACCCCACAGTGGTG  300

seq1  ACTGTTTAATCCTTCTCAGAACAATGGCAGGATAAACGTACTGTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAATCCTTCTCAGAACAATGGCAGGATAAACGTACTGTTCCTTC  350

seq1  TTCACTAATAGCATCCCTGACCAGAGGCTTATCGTCCATTTTCTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAATAGCATCCCTGACCAGAGGCTTATCGTCCATTTTCTGTTTGT  400

seq1  AATTTGTTTATTTTCTTATTCTACTAATTCTATTGTCTCCTCTTCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTATTTTCTTATTCTACTAATTCTATTGTCTCCTCTTCAGATT  450

seq1  AAAAGCCCAGAGGGAAGGAACGTCTGTGTCTCTATAGTGTCTGGTACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCAGAGGGAAGGAACGTCTGTGTCTCTATAGTGTCTGGTACAAC  500

seq1  CAATTACTGATTCTGAATGCTTACTGACAATATAAGACTGTTTAATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACTGATTCTGAATGCTTACTGACAATATAAGACTGTTTAATATTC  550

seq1  TGCTTTTCTATAACAGTGCATAGAATATTTAACATAGTTATGGAAACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTATAACAGTGCATAGAATATTTAACATAGTTATGGAAACATT  600

seq1  ACTGCTTCCCAGAACTGTATTTGTCTGATAGCTATATCCTAAATAATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCCCAGAACTGTATTTGTCTGATAGCTATATCCTAAATAATCCA  650

seq1  TTATTATGCAAGTTTTATCTTTTAAAACATTCATGACTTTCATCCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGCAAGTTTTATCTTTTAAAACATTCATGACTTTCATCCATTAA  700

seq1  TCTGATGATTAATAATATCTATTGCAACTAAGATATATATATATATATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATTAATAATATCTATTGCAACTAAGATATATATATATATATCC  750

seq1  TAGTTTGTATATCCTAGTATATCATATTTGCATAATATATATTATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTATATCCTAGTATATCATATTTGCATAATATATATTATATATA  800

seq1  -TTGTATATACTATGTGAATACCAGTAGGTACAGGGCAGATAGCATATGG  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATACTATGTGAATACCAGTAGGTACAGGGCAGATAGCATATGG  850

seq1  AACAACTGGTCCTTCATTGAAGGTCACTGTTAAAAGAATGGTCAATACTA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAACTGGTCCTTCATTGAAGGTCACTGTTAAAAGAATGGTC-ATACTA  899

seq1  GGCAAAAAACAGGTTTGCCAGCCTGTCCTGAAAAAGATGGCTGTTGCATA  949
       |||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  -GCAAAAAACAGG-TTGCCAGCCTGTCCTGAAAAAGATGGCTGTTGC-TA  946

seq1  AAATCAAATCATA-TGTCAGCCTCCCATTTTTCCACTCGTGGATAGTAAC  998
      ||||| ||||||| |||||||||||||||||||| |||| ||||||||||
seq2  AAATC-AATCATATTGTCAGCCTCCCATTTTTCC-CTCGGGGATAGTAAC  994

seq1  C-TTAGTTTCAGTAAAGGGTTAAGAAAACAATTGAAAAATTAAAAGTCCG  1047
      | ||||||||||||||||||||   |||| |||| |||||||||||||||
seq2  CTTTAGTTTCAGTAAAGGGTTA--GAAACCATTGGAAAATTAAAAGTCCG  1042

seq1  AGTTTTGTGAGTGTATATTTTATCTGTATTCTTCTAAACCTTTTTACTTT  1097
      || |||||||  || ||||| ||||| |||| |||||  | |||||| ||
seq2  AG-TTTGTGA--GTTTATTTAATCTG-ATTCCTCTAA--CCTTTTAC-TT  1085

seq1  CAGGTCCTTTTAGTATGTGTTTCTGACTGGGGTCTGACACTTTATGGACC  1147
      |||  | ||||||||||||||||||||||||| ||||| | |||||||||
seq2  CAGTCCTTTTTAGTATGTGTTTCTGACTGGGG-CTGAC-CCTTATGGACC  1133

seq1  TG-ATGTTGGAG-TCACACTTGAGCCTTCCTTCTT-TCCT  1184
       | | ||||||| |||| |||||||  | |||||| ||||
seq2  CGTAGGTTGGAGTTCAC-CTTGAGC--TTCTTCTTCTCCT  1170

seq1: chrY_2652627_2652692
seq2: B6Ng01-089H15.g_477_541

seq1  TCGCCATTACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAA  50
      ||||| ||||||||||||||||| |  | ||||||||| |||||||||||
seq2  TCGCCGTTACAAGATGGCGCTGACA-GCTGTGTTCTAAGTGGTAAACAAA  49

seq1  TAGTCTGCGCATGTGC  66
      || |||||||||||||
seq2  TAATCTGCGCATGTGC  65