BAC Information

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BAC

Clone NameB6Ng01-089M02
ChromosomeY (Build37)3 (Build37)
Map Location 1,870,395 - 1,870,575157,393,164 - 157,393,676
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M02.bB6Ng01-089M02.g
ACCDH902250DH902251
length215507
definitionDH902250|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M02, 5' end.DH902251|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,395 - 1,870,575)(157,393,164 - 157,393,676)
sequence
attgttaacaactgggatcaacaagggctccaccaacaacattatgaact
aaccagtaccccagagctcttgactctagctgcatatgtatcaaaagatg
gcctagtcggccatcaatggaaagagaggcccataggtcaggcaaacttt
atacgccccagtacaggggaacgccagggccaaaaaatgggaatgggtgg
gtaggggagtggggg
tccctgtcttctttcttcctagagaaaccacaggggatttcctctgttta
tggaattctgagaccatgatttgcctgccagcttaagttacaagactaat
gctggtgataaatatttgaggaacacagacatctccacatcagagtcaat
tgtgcttgtactcatatggaagttcagaaatgctttaaagacaaatgtaa
gggggatgcatcattctggaaatagcaatcctacagtatgattggtatca
gtatgaggctgaagagagccactggacaggactactgccttttattcaac
attatggtgtcctctgtggatctagaacagtttctatcaggtgacacagg
agactgccctttattactctcagctctgtgtgcttttggtgctagcttgc
ataagcactccattttgattctgagaatgtccatacttccacaattaatt
ttgaggcctgtcttttcttccttcctttcttccttccttccttccttact
tccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870395_1870575
seq2: B6Ng01-089M02.b_83_263

seq1  AACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCA  50
      ||||||||||||||||||||| |||||| |||||||||||||| ||||||
seq2  AACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCA  50

seq1  TAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCAT  100
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATGTATCAAAAGATGGCCTAGTCGGCCATCAATGGAAAGAGAGGCCCAT  100

seq1  TGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAA  150
       || || |||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGTCAGGCAAACTTTATACGCCCCAGTACAGGGGAACGCCAGGGCCAAA  150

seq1  AAGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  181
      ||  || | ||||||||||||||||||||||
seq2  AAATGGGAATGGGTGGGTAGGGGAGTGGGGG  181

seq1: chr3_157393164_157393676
seq2: B6Ng01-089M02.g_70_582

seq1  GAATTCTCCCTGTCTTCTTTCTTCCTAGAGAAACCACAGGGGATTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGTCTTCTTTCTTCCTAGAGAAACCACAGGGGATTTCCTC  50

seq1  TGTTTATGGAATTCTGAGACCATGATTTGCCTGCCAGCTTAAGTTACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGGAATTCTGAGACCATGATTTGCCTGCCAGCTTAAGTTACAAG  100

seq1  ACTAATGCTGGTGATAAATATTTGAGGAACACAGACATCTCCACATCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGCTGGTGATAAATATTTGAGGAACACAGACATCTCCACATCAGA  150

seq1  GTCAATTGTGCTTGTACTCATATGGAAGTTCAGAAATGCTTTAAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTGTGCTTGTACTCATATGGAAGTTCAGAAATGCTTTAAAGACAA  200

seq1  ATGTAAGGGGGATGCATCATTCTGGAAATAGCAATCCTACAGTATGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGGGGATGCATCATTCTGGAAATAGCAATCCTACAGTATGATTG  250

seq1  GTATCAGTATGAGGCTGAAGAGAGCCACTGGACAGGACTACTGCCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTATGAGGCTGAAGAGAGCCACTGGACAGGACTACTGCCTTTTA  300

seq1  TTCAACATTATGGTGTCCTCTGTGGATCTAGAACAGTTTCTATCAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTATGGTGTCCTCTGTGGATCTAGAACAGTTTCTATCAGGTGA  350

seq1  CACAGGAGACTGCCCTTTATTACTCTCAGCTCTGTGTGCTTTTGGTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGACTGCCCTTTATTACTCTCAGCTCTGTGTGCTTTTGGTGCTA  400

seq1  GCTTGCATAAGCACTCCATTTTGATTCTGAGAATGTCCATACTTCCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATAAGCACTCCATTTTGATTCTGAGAATGTCCATACTTCCACAA  450

seq1  TTAATTTTGAGGCCTGTCTTTTCTTCCTTCCTTTCTTCCTTCCTTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGAGGCCTGTCTTTTCTTCCTTCCTTTCTTCCTTCCTTCCTTC  500

seq1  CTTCCTTCCTTCC  513
      ||| ||||| |||
seq2  CTTACTTCCATCC  513