BAC Information

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BAC

Clone NameB6Ng01-090H22
ChromosomeY (Build37)9 (Build37)
Map Location 1,870,346 - 1,870,5697,945,972 - 7,947,039
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H22.bB6Ng01-090H22.g
ACCDH902779DH902780
length4741,050
definitionDH902779|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H22, 5' end.DH902780|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,569)(7,945,972 - 7,947,039)
sequence
tctcttccgagttacagagacaaaatttggaagtgtgacgaaaggatgga
ccatctagtgattgccatatccagagatccatcccatgatcagctcccaa
acgctgacaccattgcatacactagcaagattttgctgaaaggacccaga
tatagctgtctcttgtgagactatgccagggcctagcaaacacagaagtg
gatgctcacagtcagctattgaatggatcacagggctcccaatggaggaa
ctagagaaagcacccaaggaactaaagggaactgcaaccctataggtgga
acaacaatatgaactaagcagtaccccggagctcttgtctctagctgcat
atgtatcaaaagatggcctagtcagccatcactgcaaagagaggcccatt
ggacttgcaaactttatatgccccagtacaggggaatgccagggtcaaaa
agggggagtgggtgggtaggggag
gaattcaccatgtagaccaggctggccctgaactaattaaataaacctag
gatttatgaaaaattaggaattccaagagaaaagagataatgttgaagaa
agtgttaaagaattgtaaattatgatttctgatgtccgttaacttggaag
acagttttgagttgggggaagtcaaattctttgctactaaattttcaaga
aagaaatgtctttggcaattatttttacatggttctgaacagtgatttga
ttttgcgtaaattgtttgcttaaaaatatagagcagcacagccgggcgtg
gtgcctcacgcctttaatcccagcactcaggaggcagaggcaggtggatt
tctgagtttgaggccagaggtctacagagtaagttccaggacagccaggg
ctacacagagaaaccctgtctcgaaaaacctatatatatatatatatata
tatatatatatatatatatatggcagctgaaccttttttctatcaagtgt
taatgtacatgtagctagtcaaatcctccaatgctaccactcattcacag
agtcactcctgaggcaccctgagctgtgccaggaacaaggacaattgtct
cacccagccacacaacactgacactgtcatttctatgaagattgacactg
acttttgatctcctaagtctgagataagacatttctgtgatgtcttgttt
cgggctcttcagcttctgatgaggacactcctggatgagacctggcctta
gagagaacacaaagtcctagttggtaggagaggggaccagcaaggatctc
accgatgaaaagcagcttaccaaatatagagaagtaatatgaagtaatat
aacctgaccatgaagctaaggctgccagccttttagtgggagagactcag
acactcagaacctcattttcaacagaggaagaggcaagtgtatcagaaga
tatacttctcaatgtgtgtcttcagactgtaacaaagttgggagtgtaca
gactgctttgagagactagatttggcacaggtagggttactccactcaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870569
seq2: B6Ng01-090H22.b_304_527

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||| ||||||||| ||||||||| |||||||||||||||||||
seq2  CTAGAGAAAGCACCCAAGGAACTAAAGGGAACTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| |||||||||| || |||||| ||||||||| |||| |||||||
seq2  ACAACAATATGAACTAAGCAGTACCCCGGAGCTCTTGTCTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCAGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| ||||||||||||||||||||||||||||||| ||||||| |||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGTCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAG  224
      ||||| ||||||||||||||||||
seq2  AGGGGGAGTGGGTGGGTAGGGGAG  224

seq1: chr9_7945972_7947039
seq2: B6Ng01-090H22.g_67_1116

seq1  GAATTCACCATGTAGACCAGGCTGGCCCTGAACTAATTAAATAAACCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGTAGACCAGGCTGGCCCTGAACTAATTAAATAAACCTAG  50

seq1  GATTTATGAAAAATTAGGAATTCCAAGAGAAAAGAGATAATGTTGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGAAAAATTAGGAATTCCAAGAGAAAAGAGATAATGTTGAAGAA  100

seq1  AGTGTTAAAGAATTGTAAATTATGATTTCTGATGTCCGTTAACTTGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAAGAATTGTAAATTATGATTTCTGATGTCCGTTAACTTGGAAG  150

seq1  ACAGTTTTGAGTTGGGGGAAGTCAAATTCTTTGCTACTAAATTTTCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGAGTTGGGGGAAGTCAAATTCTTTGCTACTAAATTTTCAAGA  200

seq1  AAGAAATGTCTTTGGCAATTATTTTTACATGGTTCTGAACAGTGATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGTCTTTGGCAATTATTTTTACATGGTTCTGAACAGTGATTTGA  250

seq1  TTTTGCGTAAATTGTTTGCTTAAAAATATAGAGCAGCACAGCCGGGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGTAAATTGTTTGCTTAAAAATATAGAGCAGCACAGCCGGGCGTG  300

seq1  GTGCCTCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATT  350

seq1  TCTGAGTTTGAGGCCAGAGGTCTACAGAGTAAGTTCCAGGACAGCCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTGAGGCCAGAGGTCTACAGAGTAAGTTCCAGGACAGCCAGGG  400

seq1  CTACACAGAGAAACCCTGTCTCGAAAAACCTATATATATATATATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAACCCTGTCTCGAAAAACCTATATATATATATATATATA  450

seq1  TATATATATATATATATATATGGCAGCTGAACCTTTTTTCTATCAAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATGGCAGCTGAACCTTTTTTCTATCAAGTGT  500

seq1  TAATGTACATGTAGCTAGTCAAATCCTCCAATGCTACCACTCATTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACATGTAGCTAGTCAAATCCTCCAATGCTACCACTCATTCACAG  550

seq1  AGTCACTCCTGAGGCACCCTGAGCTGTGCCAGGAACAAGGACAATTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCCTGAGGCACCCTGAGCTGTGCCAGGAACAAGGACAATTGTCT  600

seq1  CACCCAGCCACACAACACTGACACTGTCATTTCTATGAAGATTGACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCACACAACACTGACACTGTCATTTCTATGAAGATTGACACTG  650

seq1  ACTTTTGATCTCCTAAGTCTGAGATAAGACATTTCTGTGATGTCTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATCTCCTAAGTCTGAGATAAGACATTTCTGTGATGTCTTGTTT  700

seq1  CGGGCTCTTCAGCTTCTGATGAGGACACTCCTGGATGAGACCTGGCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTCTTCAGCTTCTGATGAGGACACTCCTGGATGAGACCTGGCCTTA  750

seq1  GAGAGAACACAAAGTCCTAGTTGGTAGGAGAGGGGACCAGCAAGGATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACACAAAGTCCTAGTTGGTAGGAGAGGGGACCAGCAAGGATCTC  800

seq1  ACCGATGAAAAGCAGCTTACCAAATATAGAGAAGTAATATGAAGTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATGAAAAGCAGCTTACCAAATATAGAGAAGTAATATGAAGTAATAT  850

seq1  AACCTGACCATGAAGCCTAAGGCTGCCAGCCTTTTAGGTGGGAGAGACCT  900
      ||||||||||||||| |||||||||||||||||||| |||||||||| ||
seq2  AACCTGACCATGAAG-CTAAGGCTGCCAGCCTTTTA-GTGGGAGAGA-CT  897

seq1  CAGACACTCAGAACCCCATTTTCAACAGAGAAAGAGGGCAAAGTGTATCC  950
      ||||||||||||||| |||||||||||||| ||||||   |||||||| |
seq2  CAGACACTCAGAACCTCATTTTCAACAGAGGAAGAGG--CAAGTGTAT-C  944

seq1  AGAAAGATAATAACTTCTTCAATGTGTGTCTTCCAGACCTGTAACAAAGT  1000
      || ||||||   ||||| |||||||||||||| |||| ||||||||||||
seq2  AG-AAGATA--TACTTC-TCAATGTGTGTCTT-CAGA-CTGTAACAAAGT  988

seq1  TGGGAGTGTACAGGACTGCCTTGTGAGAGACCTAGATTTGCCACAGGTAG  1050
      |||||||||||| |||||| ||| ||||   ||||||||| |||||||||
seq2  TGGGAGTGTACA-GACTGCTTTGAGAGA---CTAGATTTGGCACAGGTAG  1034

seq1  TGGGTACTCACACTCAGA  1068
       || ||||| ||||||||
seq2  -GGTTACTC-CACTCAGA  1050