BAC Information

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BAC

Clone NameB6Ng01-091D24
ChromosomeY (Build37)
Map Location 1,870,446 - 1,870,673
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091D24.bB6Ng01-091D24.g
ACCDH903329DH903330
length1,217516
definitionDH903329|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D24, 5' end.DH903330|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccaaacttttaaagatgagctaatacctacactcttcaaact
tccacaaaatgaaaacagatggaacattgctaaactcattctataagatc
actgtcaccctgatacctaagtccacagaaacactcatcaaagtaagaat
ttcagaccaatttcccttaataacattgatgcaaaaataatcaataaaat
actcacaaacagaatgcaagaacacagcaaaattatcatccaccatgatc
aagtaggcttcatcccagagatacagggatgtctcaacatacaaaaatcc
atcaatgtaatacaacatataaacaaactgaaagaaaaaaaatgatacta
tcacatcattagttgttggaaatagcctttgacaaaatccaaaatcactt
catgattaaagtcttggagatatcaggggtaaaatttccatacctaaatt
aacctaatttaaaaatcaagtacagatctaaacagagaattctcaacaga
gggatctctaatcgccaataagtacttaaagaaatgttcagtgtccttag
tcatgaagaaatgcaaatcaaatgactctgagattccatcttacacctgt
cagtatgatgaagatcaaaaacacaagggacagtacatgctggtgaggac
atgtagcaaggggaacactcctccattgctggtgggaatagaaaaatgca
caaccatttcagaaagcagtatattggttgctcagaaaactgggaatggt
tctacctcgagactaagctatatccttcctgggcatatgccctgggactg
ttcaaccaggccttggtccagatccaggaactgaaccatgacccagagtt
aaggtcctaaagggctttataagctcatgatctagttacacctgtgacaa
gttagttcaccaatcaggatttaggaacagcatgatttccttaggcacaa
gtctttattgtacacatatcctgcttccattggatggggtattcagctgt
ggcaagggacttacccttcttctaatattcatttcctaacttgtctacca
gattcgacttgtcttgcctccatatcgtgtctaactggcctaccatgatg
ttcagttgtggggggcagtggctatgtcaagatagtctgtcctcagttca
gctgagtttgacccggacaatccatggagataatcacctgcgatggatgg
aagggcgttctcccatg
gaattcccctgttcctaaatccttattgatggaataacttggacacaaat
gttcataggtcttggactttaagggtcctatatgttgtatctggaccaca
gtcctggttttcagtcctgggccatatgctcaataaactatcctgtcaga
ctgagaccagtgttcatgtggtttgtcagacgattccatggacatcagca
ttttttaattccattcatttgactgcaatttcatgatgccttgttttgtt
tgtttgtttgtttgtttgtttgtttgtttttcctcttttttcttttttct
ttccattttttattagggatttagctcatttacatttccaatgctatacc
aaaagtccctcatacccacccacccccactcccctacacacccactcccc
ctttttggccctggcgttcccctgtactagtgcatataaagtttgcgtgt
ccaatgggcctctctttccagtgatggccgactaggccatcttttgatac
atatgcagctaaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870446_1870673
seq2: B6Ng01-091D24.g_350_568 (reverse)

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  50

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  100
      ||||| ||||||||||||||| | ||||||||||||||||||||||||||
seq2  GGACACGCAAACTTTATATGCACTAGTACAGGGGAACGCCAGGGCCAAAA  100

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCTATGGGGGACTT  150
      ||||| |||||||| |||||||||||||||||||||| |||| |||||||
seq2  AGGGGGAGTGGGTGTGTAGGGGAGTGGGGGTGGGTGGGTATGAGGGACTT  150

seq1  TTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTTA-AAAAAATGG  199
      |||||||||||||||||||||||||||||||||| ||| | |||||||||
seq2  TTGGTATAGCATTGGAAATGTAAATGAGCTAAATCCCTAATAAAAAATGG  200

seq1  AAAAGAGAAAAAAAACTAATATAAAAAGA  228
      ||   |||||||| |       |||||||
seq2  AA---AGAAAAAAGA-------AAAAAGA  219