BAC Information

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BAC

Clone NameB6Ng01-092O21
Chromosome3 (Build37)Y (Build37)
Map Location 87,424,316 - 87,425,3791,870,469 - 1,870,574
singlet/doubletsingletsinglet
Overlap geneArhgef11
Upstream geneLrba, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801
Downstream geneEG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092O21.bB6Ng01-092O21.g
ACCDH904555DH904556
length1,071456
definitionDH904555|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O21, 5' end.DH904556|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,424,316 - 87,425,379)(1,870,469 - 1,870,574)
sequence
gaattcacactttttggtaagttcacttaacctcaacacaagtctggagt
gtttacggatcactgactgcataccaagcactgaacttagcagataggac
aaaagcaagccaaacaacacagcccctgcattcagagcggactagtactt
ctgtggcctttggggtgttgtattgttgagccagggtgaaactcaggctg
gcctcaaactctctaagtagcacaggcttcagccttgtaatccttcctgc
ttcagcttcccaagtgctggagtcataagcatgtgccacgcacggtgtct
actttccaattagatcgcctgctctcaggaagaaacgaataattttctaa
aaccctgacaccatctcacacaatatattggcaagctaaaagagaataga
attcctgacaccataattcgaaacacttccttctaatctgttactccagt
gtggcatcagactaaattatcatgcaggaggcggaagcaagattgaaagt
cccagatacacagcaagttgggaagccagctggggtgacaaaaaaaaaaa
aaaaaaaaaaaagattgtgaattatttacattcacaaggtacagagcctg
cgacatcaagttcaacagtgtactttgactctattactgcaagatcaggg
aggccagcaagacaaagccagaaggggacttcagtttcaggactgactgt
ggcagagagtcaggcacggtaaaagcaagcaaggccttcccatggaataa
cacactgctttaactccagagattataggtacaaagtacagggggacact
tgacaactgccagagagagcaaaatggtgccttacccattctaaaggtga
gtctataaacctctgcagacaggattgggcaacaggaagaacagggattc
agaactgggaacttagattttacactagattctggacattccttcaaata
acgctaaatggcactgaacaaacccgggaattccactcagtcgctcatct
tgcaaaagtgagcagtgactttctgccttgtctaccttcacagaattaca
tcataaggttcaaggaagcag
tcacctgaggaatactgaatggctgcgaagcacctgaaaaaatgttcaac
atccttaatcatcagagaaatacaaatcaaaacaatcctgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tgtcgaggatgtggaaacagaggaacactccttcattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctggcggttccttagaaaat
tggacatagtactactggaggatcccacaatacctctcctgggcatatat
ccagaagatgtcccaaccggtaagaaggacacatgctccactatgtaatg
ggccatcactggaacgagaggcccattggacacgcaaactgtatatgccc
cagtacaggggaacgccagggccaaaaaaatgggaatgggtgggtaggga
gtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87424316_87425379
seq2: B6Ng01-092O21.b_47_1117 (reverse)

seq1  CTGCTTCCTTGAACCTTATGATGTA--TCTGTG-AGGTAGACAA-GCCGG  46
      |||||||||||||||||||||||||  |||||| |||||||||| || | 
seq2  CTGCTTCCTTGAACCTTATGATGTAATTCTGTGAAGGTAGACAAGGCAGA  50

seq1  AAGTCACTGCTCACATTTTGC-AGATGAGGCGACTGAGTGG-ATTCCC-G  93
      |||||||||||||| |||||| |||||| |||||||||||| |||||| |
seq2  AAGTCACTGCTCAC-TTTTGCAAGATGA-GCGACTGAGTGGAATTCCCGG  98

seq1  GTTTGTTCAGTGCCATTTAGCGTTATCTG-AGGAGTGT-CAGGATCTAGT  141
      |||||||||||||||||||||||||| || |||| ||| ||| |||||||
seq2  GTTTGTTCAGTGCCATTTAGCGTTATTTGAAGGAATGTCCAGAATCTAGT  148

seq1  GTAAAATCTTAAGTT-CCAGTTCTGAATCCCTGTTCTTCCTGTTGCCC-A  189
      |||||||| |||||| |||||||||||||||||||||||||||||||| |
seq2  GTAAAATC-TAAGTTCCCAGTTCTGAATCCCTGTTCTTCCTGTTGCCCAA  197

seq1  TCCTGTCTGCAGAGGTTTATAGACTCACCATTTAGAATGGGTAAGGCACC  239
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTGTCTGCAGAGGTTTATAGACTCACC-TTTAGAATGGGTAAGGCACC  246

seq1  ATTTTGCTCTCTCTGGCAGTTGTCAAGTGTCCCCCTGTACTTTGTACCTA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCTCTCTGGCAGTTGTCAAGTGTCCCCCTGTACTTTGTACCTA  296

seq1  TAATCTCTGGAGTTAAAGCAGTGTGTTATTCCATGGGAAGGCCTTGCTTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTGGAGTTAAAGCAGTGTGTTATTCCATGGGAAGGCCTTGCTTG  346

seq1  CTTTTACCGTGCCTGACTCTCTGCCACAGTCAGTCCTGAAACTGAAGTCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACCGTGCCTGACTCTCTGCCACAGTCAGTCCTGAAACTGAAGTCC  396

seq1  CCTTCTGGCTTTGTCTTGCTGGCCTCCCTGATCTTGCAGTAATAGAGTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGCTTTGTCTTGCTGGCCTCCCTGATCTTGCAGTAATAGAGTCA  446

seq1  AAGTACACTGTTGAACTTGATGTCGCAGGCTCTGTACCTTGTGAATGTAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTTGAACTTGATGTCGCAGGCTCTGTACCTTGTGAATGTAA  496

seq1  ATAATTCACAATCTTTTTTTTTTTTTTTTTTTTTTTGTCACCCCAGCTGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCACAATCTTTTTTTTTTTTTTTTTTTTTTTGTCACCCCAGCTGG  546

seq1  CTTCCCAACTTGCTGTGTATCTGGGACTTTCAATCTTGCTTCCGCCTCCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAACTTGCTGTGTATCTGGGACTTTCAATCTTGCTTCCGCCTCCT  596

seq1  GCATGATAATTTAGTCTGATGCCACACTGGAGTAACAGATTAGAAGGAAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATAATTTAGTCTGATGCCACACTGGAGTAACAGATTAGAAGGAAG  646

seq1  TGTTTCGAATTATGGTGTCAGGAATTCTATTCTCTTTTAGCTTGCCAATA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCGAATTATGGTGTCAGGAATTCTATTCTCTTTTAGCTTGCCAATA  696

seq1  TATTGTGTGAGATGGTGTCAGGGTTTTAGAAAATTATTCGTTTCTTCCTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGAGATGGTGTCAGGGTTTTAGAAAATTATTCGTTTCTTCCTG  746

seq1  AGAGCAGGCGATCTAATTGGAAAGTAGACACCGTGCGTGGCACATGCTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCGATCTAATTGGAAAGTAGACACCGTGCGTGGCACATGCTTA  796

seq1  TGACTCCAGCACTTGGGAAGCTGAAGCAGGAAGGATTACAAGGCTGAAGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAGCACTTGGGAAGCTGAAGCAGGAAGGATTACAAGGCTGAAGC  846

seq1  CTGTGCTACTTAGAGAGTTTGAGGCCAGCCTGAGTTTCACCCTGGCTCAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTACTTAGAGAGTTTGAGGCCAGCCTGAGTTTCACCCTGGCTCAA  896

seq1  CAATACAACACCCCAAAGGCCACAGAAGTACTAGTCCGCTCTGAATGCAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAACACCCCAAAGGCCACAGAAGTACTAGTCCGCTCTGAATGCAG  946

seq1  GGGCTGTGTTGTTTGGCTTGCTTTTGTCCTATCTGCTAAGTTCAGTGCTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTTGTTTGGCTTGCTTTTGTCCTATCTGCTAAGTTCAGTGCTT  996

seq1  GGTATGCAGTCAGTGATCCGTAAACACTCCAGACTTGTGTTGAGGTTAAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCAGTCAGTGATCCGTAAACACTCCAGACTTGTGTTGAGGTTAAG  1046

seq1  TGAACTTACCAAAAAGTGTGAATTC  1064
      |||||||||||||||||||||||||
seq2  TGAACTTACCAAAAAGTGTGAATTC  1071

seq1: chrY_1870469_1870574
seq2: B6Ng01-092O21.g_426_531

seq1  GGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCC  50
      |||||||||||||| ||||||||||||||||| ||||||| |||||||||
seq2  GGCCATCACTGGAACGAGAGGCCCATTGGACACGCAAACTGTATATGCCC  50

seq1  CAGTACAGGGGAACGCCAGGGCC-AAAAAGGGGCAGTGGGTGGGTAGGGG  99
      ||||||||||||||||||||||| |||||  || | |||||||||| |||
seq2  CAGTACAGGGGAACGCCAGGGCCAAAAAAATGGGAATGGGTGGGTA-GGG  99

seq1  AGTGGGG  106
      |||||||
seq2  AGTGGGG  106