BAC Information

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BAC

Clone NameB6Ng01-096B22
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,589 - 1,121,05518,835,643 - 18,835,968
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096B22.bB6Ng01-096B22.g
ACCDH906870DH906871
length593953
definitionDH906870|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B22, 5' end.DH906871|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,589 - 1,121,055)(18,835,643 - 18,835,968)
sequence
gaattctttgtttagccctttaccccattttttcattaatatttttatta
catattttcctcaattacatttccaatgctatcccaaaagtcccccatac
gctcccccccacttccgtacccactcattcgcattttttttttggccctg
gcgttcccctgtactggggcatatacagtttgtgtgtccagtgggcctct
gtttccagtgatggccgactaggccatcttttgatacatatgcagctaga
gtcaagagctccggggtactggttagttcataatgttgttccacctatag
ggttgcagatccctttagctccttgggtactttctctagctcctccattg
ggggccctgttatccctccaatagctgactgtgagtatccacttctgtgt
ttgctaggcccctgcatagtctcacaagagacagctacatctgggacctt
ttgataaaatcttgctagtgtatgcaatggtgtcagcgtttggaagctga
ttatggggtggatccctggatatggcaggctctagatggtccatcctttc
gtctcagctccaaactttgtctctgtaactccttccatgggtg
gaattctttgttcatttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatattttcaaggcttttccccac
cttctcctctataagtttcagtgtctcggaatcttactcttaactaagct
catcttttctatagctttctgaaatttggctggctggttcaagtcagtta
ttctggcccaaattcctgtccaagatacctgattcacacaggattcttgt
ggcctctgactgaattgctctgcttggcctcaaattacctcatgcaatct
gttcttatcttctggcttcttttcattctctggcttctcctgtcttcacc
tgcaacctgtctttgtaaacctgtcccaataaaacacacatgcccccccc
cacacacaaacacacacacacacacacacacacacacacacacacacaca
cttgtactaagggactgcatataatcaatccataaccattaaaggtgtgt
tcatgtctgcattccagctagatcacacagacctagaaagtctttgcatg
tgatcacttgctagaacagccatgttgctggattaaaattattgtacaat
aaataaacactaaattaacatgaagaagtactagcatgttattgcaaatg
ttatattttatttcttataatgtaatattttaatatctttattttctctt
gacaagtaaaatttttaacaaaatataacaaataaaacatattattattt
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120589_1121055
seq2: B6Ng01-096B22.b_70_542

seq1  TTTTTTCCAT-----TTTTTATTAGGTATTTAACTCATTTACATTTCCAA  45
       ||||| |||     |||||||||  |||||  |||| ||||||||||||
seq2  -TTTTTTCATTAATATTTTTATTACATATTTTCCTCAATTACATTTCCAA  49

seq1  TGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCAC  95
      |||||| ||||||||||||||||  | | | |||||||| || | |||||
seq2  TGCTATCCCAAAAGTCCCCCATA--CGCTCCCCCCCACTTCCGTACCCAC  97

seq1  CCACTCCC----CCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATAT  141
       || || |      |||||||||||||  |||||||||||||||||||||
seq2  TCATTCGCATTTTTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATAT  147

seq1  AAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGC  191
      | ||||||   ||||| ||||||||| |||||||||||||||||||||||
seq2  ACAGTTTGTGTGTCCAGTGGGCCTCTGTTTCCAGTGATGGCCGACTAGGC  197

seq1  CATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTT  241
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTT  247

seq1  AGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTT  291
      || |||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTT  297

seq1  GGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAG  341
      || ||||||||||||||||||||||||| ||||| | |||| |||| |||
seq2  GGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTTATCCCTCCAATAG  347

seq1  CTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCA  391
      ||||||||||| ||||||||||||||||||| |||||| |||||||||||
seq2  CTGACTGTGAGTATCCACTTCTGTGTTTGCTAGGCCCCTGCATAGTCTCA  397

seq1  CAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATG  441
      |||||||||||||||||||   |||||  |||||||||||||||||||||
seq2  CAAGAGACAGCTACATCTGGGACCTTTTGATAAAATCTTGCTAGTGTATG  447

seq1  CAATGGTGTCAGCGTTTGGATGCTGA  467
      |||||||||||||||||||| |||||
seq2  CAATGGTGTCAGCGTTTGGAAGCTGA  473

seq1: chr6_18835643_18835968
seq2: B6Ng01-096B22.g_68_394 (reverse)

seq1  GAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATAT  50
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAAGCCTTGAAAATAT  50

seq1  GGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGA  99
      ||||| ||||||||| ||||||||||||||||||||||| |||||||| |
seq2  GGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAA  100

seq1  GGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAG  149
      | | |||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAG  150

seq1  GCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAG  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAAAAGACACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAAG  200

seq1  GATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATA  250

seq1  AAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAA  300

seq1  TGGGGCTCAGAACTGAACAAAGAATTC  326
      |||||||||||| ||||||||||||||
seq2  TGGGGCTCAGAAATGAACAAAGAATTC  327