BAC Information

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BAC

Clone NameB6Ng01-096O16
ChromosomeY (Build37)
Map Location 1,120,585 - 1,121,059
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096O16.bB6Ng01-096O16.g
ACCDH907426DH907427
length9811,172
definitionDH907426|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O16, 5' end.DH907427|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttaggtctgagccccatttttttttaattttttattagg
tatttagctcatttacatttccaatgctataccaaaagtcccccataccc
acccacccccactcccctacccacccactccccctttttggccctggcgt
tcccctgtactggggcatataaagtttgcgtgtccaatgggcctctcttt
ccagtgatggccgactaggccatcttttgatacatatgcagctagagtca
agagctccggggtactggttagttcataatgttgttccacctatagggtt
gcagatccctttagctccttgggtactttctctagctcctccattgggag
ccctgtgatccatccattagctgactgtgagcatccacttctgtgtttgc
taggccccggcatagtctcacaggagacagctacatctgggtcctttcaa
taaaatcttgctactgtatgcaatggtgtcagcgtttggatgctgattat
ggggtggatccctggatatggcagtctctacatggtccatcctttcatct
cagctccaaactttgtctctgtaactccttccaagggtgttttgttccca
cttctaaggaggggcatagtgtccacacttcagtcttcatttttcttgag
tttcatgtgtttaggaaattgtatcttatatcttgggtatcctaggtttt
gggctaatatccacttatcagtgagtacatattgtgtgagttcctttgtg
aatgtgttacctcactcaggatgatgccctccaggtccatccatttggct
aggaatttcataaattcattctttttaatagctgagtagtactccattgt
gtagatgtaccacattttctgtatccatttcctctgttgaggggcatctg
ggttcttttccagcttctggctattataaataaggctgctatgaacatag
ttgagcatgtgtcttcttaccagtttggggc
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagattgtcctgaatttcatctagaatccgccctac
cttaaccacttgataacatgtgaaaaggaacaaaagggcttctaacacta
gaaaaaattcaaggccaaacattttccactttacttctgatagactgtct
tgaatttccttagaaagttcaaggccaggcttacctcgtaaagctatact
cactggtactctcgttccccagctgaaaagttctgaattcatgcagttga
atccttcttaacagtctgctttacgggaacctttattaccgcgacccgca
gttctggttctggaatgagggatcttccttgcgccagtcccgagtttttt
ctcgtcccggaattcggcaccaattgttattagacgcgttctcacgcccg
gccaggaagaacaccacagaccagaatcttctgcggcaaaactttattgc
ttacatcttcaggagccagagtgcaagaagcaagagcgcgagagaaaacg
aaaccccgtcccttttttaggagagttatatttcgcctaggacgtgtcac
tccctgattggctgcagcccatcggccgagttgacgtcacggggaaggca
gagcacatggagtggagaaccaccctcggcatatgcgcagattatttgtt
taccacttagaacacagctgtcagcgccatcttgtacggcgatgtgggcg
cggctccaacacactgtgggacatagaacaagtctttgcctaaagagtcg
ctgctatcgcctatggagcctctctgtgctccagcaccacacttacagcc
cagcagcagcactgacagcagactctcctcccagggacagctgagttctc
ccctctttaccttgtcagctaatcagcaggttcccgacctgtttcaggct
ttctatggcatacagtgtaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120585_1121059
seq2: B6Ng01-096O16.b_73_546

seq1  ATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAAT  50
      ||||||||||  ||||||||||||||||||| ||||||||||||||||||
seq2  ATTTTTTTTT-AATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT  49

seq1  GCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACC  100
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACC  99

seq1  CACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGT  150
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  CACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGT  149

seq1  TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  200
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  199

seq1  TTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTC  250
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTC  249

seq1  ATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTA  300
      |||| ||||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTA  299

seq1  CTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGAC  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGAC  349

seq1  TGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGA  400
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAGGA  399

seq1  GACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATG  450
      ||||||||||||||  |||||||||||||||||||||| |||||||||||
seq2  GACAGCTACATCTGGGTCCTTTCAATAAAATCTTGCTACTGTATGCAATG  449

seq1  GTGTCAGCGTTTGGATGCTGATTAT  475
      |||||||||||||||||||||||||
seq2  GTGTCAGCGTTTGGATGCTGATTAT  474