BAC Information

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BAC

Clone NameB6Ng01-097E03
ChromosomeY (Build37)
Map Location 1,120,586 - 1,121,008
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097E03.bB6Ng01-097E03.g
ACCDH907680DH907681
length9861,188
definitionDH907680|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E03, 5' end.DH907681|Mus musculus domesticus DNA, BAC clone: B6Ng01-097E03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttttttttttccattttttattag
gtatttcgctcatttacatttgcaatgctataccaaaagtcccccatagc
cacccaccccctctcccctacccacccactccccttttatggccctggca
ttcccctgtactggggcatataaagtttgcgtgtccaatgggcctctctt
tccagtgatggccgactaggccatcttttgatgcatatgcagctagagtc
aagagctccggggtactggttagttcataatgttgttccacctatagggt
tgcagatccctttagcttctttggtactttctctagctccttcattgggg
gccatgtgatccatccaatagccgactgtgagcatccacttctatgtttg
ctaggcccaggcatactctgacaagagacagctatatcagggtcctttca
gcataatcttgctagtgtatgcaatggtgtcagcatttggaagctgatta
tgggatggatccccggatatgctagtgtctacatggtccatccttttatc
tcagctccaaactttgtctctgtaactccttccaagggtgttttgttccc
acttctaaggaggggcatagtgttcacacttcagtcttcatttttcttga
gtttcatgtgtttaggaaattgtatcttatatcttgggtatcttaggttt
tgggctaatatccacttatcagtgagtacatattgtgtgagttcctttgt
gaatgtgttacctcactcaggatgatgccctccaggtccatccatttggc
taggaatttcataaattcattctttttaatagctgagtagtactccattg
tgtagatgtaccacattttctgtatccattcctctgttgaggggcatctg
ggtccttccagcttctggctatataaataaggctgc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaactctgagat
tccacttcactcctgtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctcctttgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcgattcctca
gaaaattggacatagtactaccggaggatcctgcaacacctctcctgggc
atatatccagaaaatgtcccaaccagtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggagaaaacccagat
gcccctcaacagaggaatggatacataaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaagtgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatccttagtgaaataacccaatcacaaag
gaactcgaacaatatgtactcactgataagtggatattagcccagaaact
taggatacctaagatataaaatataacttgccaaatgcatgaaattcaag
aagaacgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatagaaggagttacagagacaaaatttggagctgtgacaa
aacgatggaccatctagtgattgccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctctctcttgtgagactatgcaggggcctagcaaac
acagaagtggatgatcacagtcagctaatggatgggtcacatggccccca
atggaggaactagagaaattaccgaaggagctaaaggatctgcaaccctt
ataggtggaacacattatgaactatcagtacccgggagctcttgactcta
gctgcatatatatcaaaagtatggcctagtcgccatcactgccaagagag
aagtccatgtactgcaaccttgtatgcctagttacaggggaacgccaggg
cccaaaaaatggaaagtgggtgggttgggaaattgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121008
seq2: B6Ng01-097E03.b_126_548

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      |||||||||||||||||||||||||||||  ||||||||||||| |||||
seq2  TTTTTTTTTCCATTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||| ||||||| |||||||
seq2  CTATACCAAAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      ||||||| ||| ||||||||| ||||||||||||||||||||||||||||
seq2  ACTCCCCTTTTATGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||  ||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATGCATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| ||||||||||||||||||||| |||||||||||||| ||| | |||
seq2  TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||| ||||||| ||| | ||||||||||| |||| ||||
seq2  TTTCTCTAGCTCCTTCATTGGGGGCCATGTGATCCATCCAATAGCCGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      |||||||||||||||| |||||||| ||||| |||||| ||| |||||||
seq2  GTGAGCATCCACTTCTATGTTTGCTAGGCCCAGGCATACTCTGACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCA  423
      ||||||| ||| |  ||||||||
seq2  ACAGCTATATCAGGGTCCTTTCA  423