BAC Information

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BAC

Clone NameB6Ng01-097K14
ChromosomeY (Build37)5 (Build37)
Map Location 1,120,590 - 1,120,86072,233,761 - 72,234,774
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097K14.bB6Ng01-097K14.g
ACCDH907969DH907970
length9271,009
definitionDH907969|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K14, 5' end.DH907970|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,590 - 1,120,860)(72,233,761 - 72,234,774)
sequence
gaattctttgtttagttctttttttttttaaattaaagtattttcctcat
ttacattttcaatgctatcccaaaggttcccccatacccacccccccatc
tcctacccacccactccccctttttggccctggcgttcccctgtactggg
gcatataaagtttgcaagtccaatgggcctctctttgcagtgatggccga
ctaggccatcttttgatacatatgcagctaaagacaagagctcccgggta
ctggttagttcatattgttgttccacctatagggttgagccccatctttt
aagggggttatttgattttctggagttcaccctcttgagttctttatata
tattggatattagtcccctatctgatttaagataggtaaagaacctttcc
caatctgttggtggcctttttctcttattgacggtgtcttttgccttgca
gaagctttgcagtttcatgaggtcccatttgtcaatcctcgatcttacag
cacaagccattgctgttctattcaggattttttccccctgtgcccatatc
ttcaaggcttttccccactttctcctctataagtttcagtgtctcttgtt
ttatgtgaagttccttgatccacttagatttgaccttagtacaaggagat
aggaatggatagattcgcattcttctacatgataacaaccagttgtgcca
gcaccatttgttgaaaatgctgtctttctttccactggatggttttagct
cccttgtcaaagatcaagtgaccatagctgtgtgggttatttctgggtcc
tcaattctattccattggtctacttgtctgtcactataccagtaccatgc
agtttttatcacaattgctctgtagtaaagctttaggtcaggcatggtga
ttccaccagaggtacttttatccttga
gaattcactctgtagaccaggctggcctcgaactcagaaatccgcctgct
tctgcctcctgagtgctgagattaaaggcatgcgccacaacgcccagctt
ccagcaccattaactaacatcaagaaaatctgtcccagatatggcccaga
tgatcactttcttgtgagtccagatccttttatgctgaaaacagtaacca
tcaaaccatatattacatatttgtcccatagctctttatttttttgtttc
tgtttcacttatcagattcccttcctttctagttttctttcacaaaccta
tttttaacttggtgagtaacattttatgctttctcatgactgtaaatcta
catagtcaatagataaatagatagtatttttattatttaaagtagcagta
tcttatatgcatttatgcaaatgtttcttttaaaaatgaaatggaataga
aattactctatatcctggggtaggcatatactgaattttatttaatgttt
acatacatgattgttcatggttattcaaactgaattttttgtaactggag
tcatgttcccataaatatttttgtatcccacctcttttccatctttctgt
ccactcttttcctttctgttgtgtctgtctgtctgtctgtctgtctgtct
gtctgtcacttcccctctctctccctgccccctctctcttcatatatata
gtgaattttcatgtttctccattctgtttacaccaggtagttggcttttc
ttgatgtgttgtgtgatctcaagatgtaatacaaataagtactaaagagc
ttgtatgtggattttaaattttgggggtttattccattctttaaagatga
gaccatgctcagagcaatttgatatatactagaataaaataaaaccatac
actatacctttgaaatatagttttataaatattgagctcaatcaaatgca
ttaaaagtaagatcttaaagtcagattatagaactaaaagctgcatgatt
atacatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120590_1120860
seq2: B6Ng01-097K14.b_65_333

seq1  TTTTTCCATTTTTTA---TTAGGTATTTAACTCATTTACATTTCCAATGC  47
      |||||   |||||||   | | ||||||  ||||||||||||| ||||||
seq2  TTTTT---TTTTTTAAATTAAAGTATTTTCCTCATTTACATTTTCAATGC  47

seq1  TATACCAAAAG-TCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  96
      ||| ||||| | ||||||||| |||||  |||||| || ||| |||||||
seq2  TATCCCAAAGGTTCCCCCATACCCACC--CCCCCA-TCTCCTACCCACCC  94

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  146
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  ACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTT  144

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  196
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTT  194

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  246
      |||||| ||||||||||| || |||||||||| ||||||||||||| |||
seq2  TTGATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTGGTTAGTTCA  244

seq1  TAACGTTGTTCCACCTATAGGGTTG  271
      ||  |||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTG  269

seq1: chr5_72233761_72234774
seq2: B6Ng01-097K14.g_71_1079 (reverse)

seq1  TACATGTATATTCATGCAGCTTTTTAGTTCTATAATCTGACTTTAAGATC  50
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TACATGTATAATCATGCAGC-TTTTAGTTCTATAATCTGACTTTAAGATC  49

seq1  TTACTTTT-ATGCATTTTGATTGAGCTCAATATTTATAAAACTATTATTT  99
      |||||||| ||||| ||||||||||||||||||||||||||||| |||||
seq2  TTACTTTTAATGCA-TTTGATTGAGCTCAATATTTATAAAACTA-TATTT  97

seq1  CAAAGGTATAGTGTATGGTTTTATTTTTATTCTAGTATATTATCAAATTG  149
      ||||||||||||||||||||||| ||||||||||||||| ||||||||| 
seq2  CAAAGGTATAGTGTATGGTTTTA-TTTTATTCTAGTATA-TATCAAATT-  144

seq1  GCTCTGATGCATGGTCTCATCTTTAAAGAATGGAATAAACCCCCAAAATT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGA-GCATGGTCTCATCTTTAAAGAATGGAATAAACCCCCAAAATT  193

seq1  TAAAATCCACATACAAGCTCTTTAGTACTTATTTGTATTACATCTTGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCACATACAAGCTCTTTAGTACTTATTTGTATTACATCTTGAGA  243

seq1  TCACACAACACATCAAG-AAAGCCAACTACCTGGTGTAAACAGAATGGAG  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCACACAACACATCAAGAAAAGCCAACTACCTGGTGTAAACAGAATGGAG  293

seq1  AAACATGAAAATTCACTATATATATGAAGAGAGAGGGGGCAGGGAGAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAAAATTCACTATATATATGAAGAGAGAGGGGGCAGGGAGAGAG  343

seq1  AGGGGAAGTGACAGACAGACAGACAGACAGACAGACAGACAGACACAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAGTGACAGACAGACAGACAGACAGACAGACAGACAGACACAACA  393

seq1  GAAAGGAAAAGAGTGGACAGAAAGATGGAAAAGAGGTGGGATACAAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAAGAGTGGACAGAAAGATGGAAAAGAGGTGGGATACAAAAAT  443

seq1  ATTTATGGGAACATGACTCCAGTTACAAAAAATTCAGTTTGAATAACCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGGAACATGACTCCAGTTACAAAAAATTCAGTTTGAATAACCAT  493

seq1  GAACAATCATGTATGTAAACATTAAATAAAATTCAGTATATGCCTACCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCATGTATGTAAACATTAAATAAAATTCAGTATATGCCTACCCC  543

seq1  AGGATATAGAGTAATTTCTATTCCATTTCATTTTTAAAAGAAACATTTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAGAGTAATTTCTATTCCATTTCATTTTTAAAAGAAACATTTGC  593

seq1  ATAAATGCATATAAGATACTGCTACTTTAAATAATAAAAATACTATCTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCATATAAGATACTGCTACTTTAAATAATAAAAATACTATCTAT  643

seq1  TTATCTATTGACTATGTAGATTTACAGTCATGAGAAAGCATAAAATGTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTGACTATGTAGATTTACAGTCATGAGAAAGCATAAAATGTTA  693

seq1  CTCACCAAGTTAAAAATAGGTTTGTGAAAGAAAACTAGAAAGGAAGGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAAGTTAAAAATAGGTTTGTGAAAGAAAACTAGAAAGGAAGGGAA  743

seq1  TCTGATAAGTGAAACAGAAACAAAAAAATAAAGAGCTATGGGACAAATAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAGTGAAACAGAAACAAAAAAATAAAGAGCTATGGGACAAATAT  793

seq1  GTAATATATGGTTTGATGGTTACTGTTTTCAGCATAAAAGGATCTGGACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATATGGTTTGATGGTTACTGTTTTCAGCATAAAAGGATCTGGACT  843

seq1  CACAAGAAAGTGATCATCTGGGCCATATCTGGGACAGATTTTCTTGATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAAGTGATCATCTGGGCCATATCTGGGACAGATTTTCTTGATGT  893

seq1  TAGTTAATGGTGCTGGAAGCTGGGCGTTGTGGCGCATGCCTTTAATCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATGGTGCTGGAAGCTGGGCGTTGTGGCGCATGCCTTTAATCTCA  943

seq1  GCACTCAGGAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG  993

seq1  TCTACAGAGTGAATTC  1014
      ||||||||||||||||
seq2  TCTACAGAGTGAATTC  1009