BAC Information

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BAC

Clone NameB6Ng01-097P08
ChromosomeY (Build37)
Map Location 1,720,524 - 1,721,436
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097P08.bB6Ng01-097P08.g
ACCDH908187DH908188
length1,169914
definitionDH908187|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P08, 5' end.DH908188|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttctcaatctgttgttggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttgcagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgat
ctgttcaagaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctgattttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaatttgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttctcccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtatgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattctgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgatgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagcgtcacgctaagatatttatattatt
tgtgactattgagaaggtgttgtttccctaattcttctcagcctgttaat
cttgtaagagaaggccattgactgtttgagtattttatatccagctactc
accgagctgttatcaggttaggggtctcttggtaagattttagggtacgt
aatatatctatcatcactcggcaagggagtgggctcctttccaattgaat
cctggatgcctcttgtgtt
gaattcacagagatctgaccacctctgtctttgagtgatagaatgagcct
taggcacctctgtctttgagtgctagaatgagtcttagccacattgatca
tctaaataacagtagtggagaaatgctactaactgctttctaattcaagc
aggttgaaatagttacagaacattaatctacttatttatgaacatcttca
atgccgttctcagaagggaactctgggttttgaatgataggatatgtcat
aaaacagtgcagctcctgtcatcagaagctgaacctaggttttagagagt
tttcatttattatgtataaactctacccctaatgtttcacagaacataca
tgggataactaacacccagtagctgtcccaacctagcactggggaccctg
cctctaagtgtctacatttggagtgttcacttttcatcatctcctagtct
tctgctgctcctggccttttagacagaactcagaggctgtccagtcagct
ttcacaacagtattagaagagtttaatttcaggtcctagggtaccacttt
cttttcatgtgatcttgaccattccttgtttcctctgaacagtggcatct
ttctcccttcctgtctgcacatggtcaggctactttctaaagagcagtta
gatctgcctaatgctcacctgattcttgggaactgggactactagctatg
accaccactatctgtttttctagatgtggcataaataagtactcaagaac
tcactttgtctctagctgcatatgtatcagaagatggcctagttggccat
cagtggaaagagaggcccattggtcctgcaaactttatatgcctcagtat
aggggaatgccagggccaagaagtaggagtgggtaggtgggaggagcgtg
tgggggacttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1720524_1721436
seq2: B6Ng01-097P08.g_68_981

seq1  GAATTCACAGAGATCTGACCACCTCTGTCTTTGAGTGATAGAATGAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCTGACCACCTCTGTCTTTGAGTGATAGAATGAGCCT  50

seq1  TAGGCACCTCTGTCTTTGAGTGCTAGAATGAGTCTTAGCCACATTGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACCTCTGTCTTTGAGTGCTAGAATGAGTCTTAGCCACATTGATCA  100

seq1  TCTAAATAACAGTAGTGGAGAAATGCTACTAACTGCTTTCTAATTCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAACAGTAGTGGAGAAATGCTACTAACTGCTTTCTAATTCAAGC  150

seq1  AGGTTGAAATAGTTACAGAACATTAATCTACTTATTTATGAACATCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAAATAGTTACAGAACATTAATCTACTTATTTATGAACATCTTCA  200

seq1  ATGCCGTTCTCAGAAGGGAACTCTGGGTTTTGAATGATAGGATATGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGTTCTCAGAAGGGAACTCTGGGTTTTGAATGATAGGATATGTCAT  250

seq1  AAAACAGTGCAGCTCCTGTCATCAGAAGCTGAACCTAGGTTTTAGAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGCAGCTCCTGTCATCAGAAGCTGAACCTAGGTTTTAGAGAGT  300

seq1  TTTCATTTATTATGTATAAACTCTACCCCTAATGTTTCACAGAACATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATTATGTATAAACTCTACCCCTAATGTTTCACAGAACATACA  350

seq1  TGGGATAACTAACACCCAGTAGCTGTCCCAACCTAGCACTGGGGACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAACTAACACCCAGTAGCTGTCCCAACCTAGCACTGGGGACCCTG  400

seq1  CCTCTAAGTGTCTACATTTGGAGTGTTCACTTTTCATCATCTCCTAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGTGTCTACATTTGGAGTGTTCACTTTTCATCATCTCCTAGTCT  450

seq1  TCTGCTGCTCCTGGCCTTTTAGACAGAACTCAGAGGCTGTCCAGTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTCCTGGCCTTTTAGACAGAACTCAGAGGCTGTCCAGTCAGCT  500

seq1  TTCACAACAGTATTAGAAGAGTTTAATTTCAGGTCCTAGGGTACCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACAGTATTAGAAGAGTTTAATTTCAGGTCCTAGGGTACCACTTT  550

seq1  CTTTTCATGTGATCTTGACCATTCCTTGTTTCCTCTGAACAGTGGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGTGATCTTGACCATTCCTTGTTTCCTCTGAACAGTGGCATCT  600

seq1  TTCTCCCTTCCTGTCTGCACATGGTCAGGCTACTTTCTAAAGAGCAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTTCCTGTCTGCACATGGTCAGGCTACTTTCTAAAGAGCAGTTA  650

seq1  GATCTGCCTAATGCTCACCTGATTCTTGGGAACTGGGACTACTAGCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTAATGCTCACCTGATTCTTGGGAACTGGGACTACTAGCTATG  700

seq1  ACCACCACTATCTGTTTTTCTAGATGTGGCATAAATAAGTACTCAAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACTATCTGTTTTTCTAGATGTGGCATAAATAAGTACTCAAGAAC  750

seq1  TCACTTTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCAT  800

seq1  CAGTGGAAAGAGAGGCCCATTGGTCCTGCAAACTTTATATGCCTCAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAAGAGAGGCCCATTGGTCCTGCAAACTTTATATGCCTCAGTAT  850

seq1  AGGGGAATGCCAGGGCCAAGAAGTAGGAGTGGGTAGGT-GGAGGAGCGTG  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGGAATGCCAGGGCCAAGAAGTAGGAGTGGGTAGGTGGGAGGAGCGTG  900

seq1  TGGGGGACTTTTGG  913
      ||||||||||||||
seq2  TGGGGGACTTTTGG  914