BAC Information

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BAC

Clone NameB6Ng01-099J07
ChromosomeY (Build37)8 (Build37)
Map Location 1,870,346 - 1,870,53995,879,646 - 95,880,671
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J07.bB6Ng01-099J07.g
ACCDH909338DH909339
length4941,060
definitionDH909338|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J07, 5' end.DH909339|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,539)(95,879,646 - 95,880,671)
sequence
tcaactgagaaataccaaatggctgagaagctcctgaaaaaaatgttcaa
cattcttaatcatcagggaaatgcaaatcaaaacaaccctgagattccat
ctcacaccagtcagaatggctaagatcaaaaattcagatcaaaaatccaa
acgctgacaccattgcatacactagcaagattttatcgaaaggacccaga
tgtagctgtctcttgtgagactatgccggggcctagcaaacacagaagtg
aatgctcacagtcagctattgaatggatcacagggctcccaatggaggag
ctagagaaagtacccaaggagctaaagggatctgcaaccctataggtgga
tcaacattatgaactaaccagtaccccggagctcttgactctagctgcat
atgtatcaaaagatggcctagtcggccatcactggaaagagaggcccatt
ggacacgcaaactttatatgccccagaacaggggaacgccaggg
gaattcatgagtttatcccaggaaaggtcactgatggagatgaggagtga
cctaggaaggagatggaggccaatcaatgatgcactgctaagcacatgcc
ccctgtgtgcatttggtgctgcagaactctgagagtaatcagaagatagg
tcttagggttattccatctgagccgtgggggagggttacttactagtcat
tggtgtgctttgatttgctgcacacatagacaaaatagtttatagtgacc
agggaaaaccttgagacaaaaggtctcctggtgttaccagtactggatat
agaagaagtcaggcttctttgcccacgcaaaacacctaacataaacatga
tgaagggagagagacttatttggggcatggtttcagtgtgcaatgattag
atagattctactgttgtgtccttggggtgagactcgacatcattttgggg
agcacagtgaagcacacatgctcatttcatggcacataagaagcaaagag
aaagtaagatgaaggcggtggtcagtaaagctgtatttccaaggacttgc
ccctagtggcacgatttacctttaatatgtggaaatactatatgatgttt
gtttgctgatttcctttctctgctttaatgtattctattcacttattatt
tgtaagtacttggggagtctatagggtttctacctgtagaaatgtgctgt
ccatggacattgttgcacacactgatttccaatttggatgctttcttttc
cttttgtcactggttgaggtagccttccagccctgtgctgaatcaaaggt
atgtgcaaggtaatctttgtcttgttccaagttttagagaaaaatatttc
cttgtgtggacaatgttggcacagggactcttgtatatacctttatatgt
taaaatacactctatctctctctattggtgaacactctacaaaagtgaat
tttatcaaatacattttatgcctgtatgaggtaactgtttttgtctctct
tgcctgtaaatgaaataaccacagttcccatgtatgttaaactgttatta
cacaagtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870539
seq2: B6Ng01-099J07.b_354_547

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
       ||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  TCAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGG  194
      ||||| |||||||||||||||||||| |||||||||||||||||
seq2  GGACACGCAAACTTTATATGCCCCAGAACAGGGGAACGCCAGGG  194

seq1: chr8_95879646_95880671
seq2: B6Ng01-099J07.g_112_1126 (reverse)

seq1  TGGACTTGTGATACATACCAGTTTAACATACATGGGAACTGT-GCTATAT  49
      |||||||||| || ||| |||||||||||||||||||||||| | ||| |
seq2  TGGACTTGTG-TA-ATAACAGTTTAACATACATGGGAACTGTGGTTATTT  48

seq1  CATGTTACAGGC-AGAGAGACAAAAACAGTTACCTCATTACAGGCATAAA  98
      ||| |||||||| |||||||||||||||||||||||| ||||||||| ||
seq2  CAT-TTACAGGCAAGAGAGACAAAAACAGTTACCTCA-TACAGGCAT-AA  95

seq1  AATGTATTTGATAAAATTCAACTTTTGTAAGAGTGTTCACCAAATAAGAG  148
      ||||||||||||||||||| |||||||| ||||||||||||||   ||||
seq2  AATGTATTTGATAAAATTC-ACTTTTGT-AGAGTGTTCACCAA--TAGAG  141

seq1  AGAGATAGAGTGTATTTTAACATAATAAAGGTAATATACAAGAGTCCCTG  198
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  AGAGATAGAGTGTATTTTAACAT-ATAAAGGT-ATATACAAGAGTCCCTG  189

seq1  TGCCAACATTGTCCACAACAAGGAAAATATTTTTCTCTAAAACTTGGAAC  248
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TGCCAACATTGTCCAC-ACAAGG-AAATATTTTTCTCTAAAACTTGGAAC  237

seq1  AAGACAAAGATTACCTTGCACATACCTTTGATTCAGCACAGGGCTGGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGATTACCTTGCACATACCTTTGATTCAGCACAGGGCTGGAAG  287

seq1  GCTACCTCAACCAGTGACAAAAGGAAAAGAAAGCATCCAAATTGGAAATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCAACCAGTGACAAAAGGAAAAGAAAGCATCCAAATTGGAAATC  337

seq1  AGTGTGTGCAACAATGTCCATGGACAGCACATTTCTACAGGTAGAAACCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGCAACAATGTCCATGGACAGCACATTTCTACAGGTAGAAACCC  387

seq1  TATAGACTCCCCAAGTACTTACAAATAATAAGTGAATAGAATACATTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTCCCCAAGTACTTACAAATAATAAGTGAATAGAATACATTAAA  437

seq1  GCAGAGAAAGGAAATCAGCAAACAAACATCATATAGTATTTCCACATATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAAGGAAATCAGCAAACAAACATCATATAGTATTTCCACATATT  487

seq1  AAAGGTAAATCGTGCCACTAGGGGCAAGTCCTTGGAAATACAGCTTTACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAATCGTGCCACTAGGGGCAAGTCCTTGGAAATACAGCTTTACT  537

seq1  GACCACCGCCTTCATCTTACTTTCTCTTTGCTTCTTATGTGCCATGAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCGCCTTCATCTTACTTTCTCTTTGCTTCTTATGTGCCATGAAAT  587

seq1  GAGCATGTGTGCTTCACTGTGCTCCCCAAAATGATGTCGAGTCTCACCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGTGTGCTTCACTGTGCTCCCCAAAATGATGTCGAGTCTCACCCC  637

seq1  AAGGACACAACAGTAGAATCTATCTAATCATTGCACACTGAAACCATGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACAACAGTAGAATCTATCTAATCATTGCACACTGAAACCATGCC  687

seq1  CCAAATAAGTCTCTCTCCCTTCATCATGTTTATGTTAGGTGTTTTGCGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAGTCTCTCTCCCTTCATCATGTTTATGTTAGGTGTTTTGCGTG  737

seq1  GGCAAAGAAGCCTGACTTCTTCTATATCCAGTACTGGTAACACCAGGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGAAGCCTGACTTCTTCTATATCCAGTACTGGTAACACCAGGAGA  787

seq1  CCTTTTGTCTCAAGGTTTTCCCTGGTCACTATAAACTATTTTGTCTATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCTCAAGGTTTTCCCTGGTCACTATAAACTATTTTGTCTATGT  837

seq1  GTGCAGCAAATCAAAGCACACCAATGACTAGTAAGTAACCCTCCCCCACG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCAAATCAAAGCACACCAATGACTAGTAAGTAACCCTCCCCCACG  887

seq1  GCTCAGATGGAATAACCCTAAGACCTATCTTCTGATTACTCTCAGAGTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATGGAATAACCCTAAGACCTATCTTCTGATTACTCTCAGAGTTC  937

seq1  TGCAGCACCAAATGCACACAGGGGGCATGTGCTTAGCAGTGCATCATTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACCAAATGCACACAGGGGGCATGTGCTTAGCAGTGCATCATTGA  987

seq1  TTGGCCTCCATCTCCTTCCTAGGTCACT  1026
      ||||||||||||||||||||||||||||
seq2  TTGGCCTCCATCTCCTTCCTAGGTCACT  1015