BAC Information

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BAC

Clone NameB6Ng01-099P04
Chromosome19 (Build37)Y (Build37)
Map Location 39,324,157 - 39,325,3801,870,349 - 1,870,422
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
Downstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099P04.bB6Ng01-099P04.g
ACCDH909596DH909597
length1,218485
definitionDH909596|Mus musculus domesticus DNA, BAC clone: B6Ng01-099P04, 5' end.DH909597|Mus musculus domesticus DNA, BAC clone: B6Ng01-099P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,324,157 - 39,325,380)(1,870,349 - 1,870,422)
sequence
gaattcaaagtaaactggcaaacatttaaatgattccagggcttcctgag
tatttataccaaattttctttagcagacaattttctgtctaaactaagat
atgtctgccaaatactggaatgaagataggcttaattgttgactgtacaa
gaacttgtgggtagtacaataatgttctatgagtgactagatctctttct
caaaaaattcaatgaattaatttacagaaaacgttctctgaaagtcaatg
ataaaaaccatcagatagggagctaagcaccttgagccatcattgcattt
gttctttgtttttctgtttgtttagcaaaggacttagacctcccttccat
atatccttcacgtaatattctaggcatgacatggggtaccatcacatcac
tgttagtccacatagaatttgacctgtgagaaagaatggccataagtttc
ttctcagaaggaaaggaattctacttcacctgtatccatggggtgctcac
aatcttggtgttctcattgattttttccatcaagctaaggaaatcctgat
ctttataatcaaaatgattctggaaaataatggagcaggtgacattgcaa
ggagcacagcccagaatgaaagtaggatcacaaagtgagcctgaaaagtg
ggaaacaattgtaatatgttattaaaatataccaagagggcactttatcc
ttattaatgagtaaagtcactttacaaattttaagcagtatattctctat
acatgcaaatagcaataacttttatcttaaatcctaattaacttcactga
aacatgattttcaatcttttttttcttttttttttaattaggtactttct
tcatttaaatttccagtgctatcccaaaagtcccccgtaccctcctcccc
cacccccgacttccctatccatccactcccacttcttggccctggcattc
ccctgtactgaggcatatagaagtctgcaagaaccaaggggcctctcttc
ccaatgatggccgactaggccatcttctgctacatatgcagctagagaac
acaagctctggggtactggctagttcatatggctgtccaccttaggtggc
agatcccccagcctcgtggtacttctctagcctcctcattggggcccgga
atccatccaatagctggatcgtggacatgaccatttggttgcctaagtcc
ggcatagcctccacaaga
gaattctttatatatattggatattagtcccatatctgatttaggatagg
taaagatcctttctcaagatgttggtggcctttttgtcttattgacattg
cctggaagaccaaagtgtggatactttgctccttcttagaattgggaaca
aaacacccattgaaagagttacagagacaaagtttggagctgagacgaaa
ggatggaccatctacagactgccatacctggggtttcatcccataatcag
cctccaaatgctgatatcattgcatacactagcaagattttggtgagaag
acacagatgtatctgtctcttgtgaggctatgcgagggtctagcaaacac
agaagttgatgctaacagtcagctattggatggatcacaggacctccaat
ggaggagatggagaaagtatccaagggagctaaaggggtctgcaacccta
taggtggaacaacaataggaactaaccagtacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_39324157_39325380
seq2: B6Ng01-099P04.b_48_1265 (reverse)

seq1  TCTTGT-GAGGCTATGCCGGGGCCTAGCAAACACAAAAGTGCATGCTCAC  49
      |||||| ||||||||||| || | |||  ||| |||| |  ||||  |||
seq2  TCTTGTGGAGGCTATGCC-GGACTTAGGCAAC-CAAATGGTCATGTCCAC  48

seq1  -AGTCAGCTATTGGATGGATTACAGGGCCCCCAATGGAGGA-GCTAGAGA  97
       |  ||||||||||||||||| |  || ||||||| ||||| ||||||| 
seq2  GATCCAGCTATTGGATGGATTCC--GGGCCCCAAT-GAGGAGGCTAGAG-  94

seq1  AAGTACCCAAGGAGCTGGGGGGATCTGCAACCCTATAGGTGGAACAGCAA  147
      |||||||  | |||   ||||||||||| | |||| |||||| ||||| |
seq2  AAGTACC--ACGAGGCTGGGGGATCTGCCA-CCTA-AGGTGG-ACAGCCA  139

seq1  TATGAACTAGCCAGTACCCCCAGAGCTTGTG-TCTCTAGCTGCATATGTA  196
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TATGAACTAGCCAGTA-CCCCAGAGCTTGTGTTCTCTAGCTGCATATGTA  188

seq1  GCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGG-TC  245
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTTC  238

seq1  TTGCAGAC-TCTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGT  294
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGACTTCTATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGT  288

seq1  GGGAGTGGATGGATAGGGAAGTCGGGGGTGGGGGAGGAGGGTACGGGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGATGGATAGGGAAGTCGGGGGTGGGGGAGGAGGGTACGGGGGA  338

seq1  CTTTTGGGATAGCACTGGAAATTTAAATGAAGAAAGTACCTAATTAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGATAGCACTGGAAATTTAAATGAAGAAAGTACCTAATTAAAAA  388

seq1  AAAAAGAAAAAAAAGATTGAAAATCATGTTTCAGTGAAGTTAATTAGGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAAGATTGAAAATCATGTTTCAGTGAAGTTAATTAGGAT  438

seq1  TTAAGATAAAAGTTATTGCTATTTGCATGTATAGAGAATATACTGCTTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAAAAGTTATTGCTATTTGCATGTATAGAGAATATACTGCTTAA  488

seq1  AATTTGTAAAGTGACTTTACTCATTAATAAGGATAAAGTGCCCTCTTGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAAAGTGACTTTACTCATTAATAAGGATAAAGTGCCCTCTTGGT  538

seq1  ATATTTTAATAACATATTACAATTGTTTCCCACTTTTCAGGCTCACTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATAACATATTACAATTGTTTCCCACTTTTCAGGCTCACTTTG  588

seq1  TGATCCTACTTTCATTCTGGGCTGTGCTCCTTGCAATGTCACCTGCTCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTACTTTCATTCTGGGCTGTGCTCCTTGCAATGTCACCTGCTCCA  638

seq1  TTATTTTCCAGAATCATTTTGATTATAAAGATCAGGATTTCCTTAGCTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCAGAATCATTTTGATTATAAAGATCAGGATTTCCTTAGCTTG  688

seq1  ATGGAAAAAATCAATGAGAACACCAAGATTGTGAGCACCCCATGGATACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAATCAATGAGAACACCAAGATTGTGAGCACCCCATGGATACA  738

seq1  GGTGAAGTAGAATTCCTTTCCTTCTGAGAAGAAACTTATGGCCATTCTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGTAGAATTCCTTTCCTTCTGAGAAGAAACTTATGGCCATTCTTT  788

seq1  CTCACAGGTCAAATTCTATGTGGACTAACAGTGATGTGATGGTACCCCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGTCAAATTCTATGTGGACTAACAGTGATGTGATGGTACCCCAT  838

seq1  GTCATGCCTAGAATATTACGTGAAGGATATATGGAAGGGAGGTCTAAGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCCTAGAATATTACGTGAAGGATATATGGAAGGGAGGTCTAAGTC  888

seq1  CTTTGCTAAACAAACAGAAAAACAAAGAACAAATGCAATGATGGCTCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTAAACAAACAGAAAAACAAAGAACAAATGCAATGATGGCTCAAG  938

seq1  GTGCTTAGCTCCCTATCTGATGGTTTTTATCATTGACTTTCAGAGAACGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGCTCCCTATCTGATGGTTTTTATCATTGACTTTCAGAGAACGT  988

seq1  TTTCTGTAAATTAATTCATTGAATTTTTTGAGAAAGAGATCTAGTCACTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAAATTAATTCATTGAATTTTTTGAGAAAGAGATCTAGTCACTC  1038

seq1  ATAGAACATTATTGTACTACCCACAAGTTCTTGTACAGTCAACAATTAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACATTATTGTACTACCCACAAGTTCTTGTACAGTCAACAATTAAG  1088

seq1  CCTATCTTCATTCCAGTATTTGGCAGACATATCTTAGTTTAGACAGAAAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTCATTCCAGTATTTGGCAGACATATCTTAGTTTAGACAGAAAA  1138

seq1  TTGTCTGCTAAAGAAAATTTGGTATAAATACTCAGGAAGCCCTGGAATCA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGCTAAAGAAAATTTGGTATAAATACTCAGGAAGCCCTGGAATCA  1188

seq1  TTTAAATGTTTGCCAGTTTACTTTGAATTC  1224
      ||||||||||||||||||||||||||||||
seq2  TTTAAATGTTTGCCAGTTTACTTTGAATTC  1218

seq1: chrY_1870349_1870422
seq2: B6Ng01-099P04.g_479_553

seq1  GAGAAAGTACCCAA-GGAGCTAAAGGGATCTGCAACCCTATAGGTGGAAC  49
      ||||||||| |||| |||||||||||| ||||||||||||||||||||||
seq2  GAGAAAGTATCCAAGGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAAC  50

seq1  AACATTATGAACTAACCATTACCCC  74
      |||| || |||||||||| ||||||
seq2  AACAATAGGAACTAACCAGTACCCC  75