BAC Information

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BAC

Clone NameB6Ng01-100C05
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,370142,629,067 - 142,630,214
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C05.bB6Ng01-100C05.g
ACCDH909726DH909727
length5001,145
definitionDH909726|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C05, 5' end.DH909727|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,370)(142,629,067 - 142,630,214)
sequence
gaattcaaatgaaatgtactcactgataagtggatattagcccagaaact
tagtaaaaattcaaatgaaatgtactcactgataagtggatattagccca
gaaacttagtatagcgagatataaggtacaagatgcaaaacacatgaaac
tgaagaagaacgaagaccaaagtgtggacactttgctccttcttagaatt
ggaaacaatcacccatggaaggagttacacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatagccagggatccatcccataaat
agcctccaaacaatgacaccatggcatacactagcaagcatttgttgcaa
ggaccataatatagctgtcccttgtgagactaggctggggcctagcaaac
acagaagtggatgctcacggtcaactattggatggatcacagggccccca
atgaaggagctagagaaagtacccaaggagctaaagagatctgcaaccct

gaattctgtattttttaatatgtaggaataaacaacaaactgtatatcta
tttgactaatatcattattccttgataggtcttagtttctgtgaatctcc
agttatttctgtttcatttaagaccattaccatgctgtatagtagttact
ccataaatatttgtcagtatgataattttcatgaatccaacctataccca
gagcaaggccagaatctaaaatactaaactaacaacatctgctacccaat
ctggtaatgcacaatgattattgtgcaagaaaccattcgcttctgtcatc
atctaaaattatacatttagtaaaatgaggaagaatggcatcacaagaca
aacaatgaattacctaagcataaaacactaagaaaaaaaaatcagtattt
tgatacttatgaagtattcatgaaatactattttaaatgttatgaattaa
gctaccaagtatattttttcatgctagttaaaagagtttcatatttcttt
tggaatactgagttcctggattctttttaaacattatttaaacattaaat
ctttttaatattaaattttacacaattagtcaatgaatttttaatttttt
ataaattttaaaatatatatatatagtgtattgtgatcatatttcatcca
tacaccccattatcacttcttttccccatagtaaacttgagaacacttcc
tcttcccaactagcccccttcatactttatgtgtttcctttacaacccct
tcctttgggtgttctgcagttaacctcatctgccaagaccagccctggtg
atggccaggtccctcagaggagttaaggagatggagagggaagagtagtc
aggcccagagatgggaagaaggttgaaatctgactgacttgcacttgggt
tgcttttatattcatgcagaactcagtagtcaggaaagattcatgttgtt
ccaaaacatagatcatatcattttcatctagacatgtgtttaaatttcct
cttgtacatctgggaccctaagtttagtcatcattataacgatgatagag
aaaactcctaggctgttttcctgtttcttgctgaaatgaataagaaaatg
tatctttcatctacgtagccgaattatattagctatgaaacacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573370
seq2: B6Ng01-100C05.b_499_548

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||| |||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ATGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCT  50

seq1: chr1_142629067_142630214
seq2: B6Ng01-100C05.g_68_1212 (reverse)

seq1  TTGTTTTCAATAGCTAAATAATATTCTGCTACGTAGATGAA--GTACATT  48
      |||| ||  |||||| ||||  |||| ||||||||||||||   ||||||
seq2  TTGTGTTTCATAGCT-AATATAATTCGGCTACGTAGATGAAAGATACATT  49

seq1  TTCTTTATTCATTTTTCAGCCAGAAACAGG-AAACAGCCTA-GACGTCTC  96
      ||| |||||||  ||||||| ||||||||| |||||||||| ||  | ||
seq2  TTC-TTATTCA--TTTCAGCAAGAAACAGGAAAACAGCCTAGGAGTTTTC  96

seq1  TCTATCATCGTTTATTAATGATGACTAAACTTAGGGTCCAAGATGTACAA  146
      ||||||||||||   |||||||||||||||||||||||| ||||||||||
seq2  TCTATCATCGTT--ATAATGATGACTAAACTTAGGGTCCCAGATGTACAA  144

seq1  GAGGAAATTTAAACACATGTCTAGATGAAAAATGATATGATCTATGTTTT  196
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGAAATTTAAACACATGTCTAGATG-AAAATGATATGATCTATGTTTT  193

seq1  GGAACAACATGAATCTTTCCCTGACTACTGAGTTCTGCATGAATATAAAA  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAACAACATGAATCTTT-CCTGACTACTGAGTTCTGCATGAATATAAAA  242

seq1  GCAACCCAAGTGCAAGTCAGTCAGATTTCAACCTTCTTCCCATCTCTGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCAAGTGCAAGTCAGTCAGATTTCAACCTTCTTCCCATCTCTGGG  292

seq1  CCTGACTACTCTTCCCTCTCCATCTCCTTAACTCCTCTGAGGGACCTGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTACTCTTCCCTCTCCATCTCCTTAACTCCTCTGAGGGACCTGGC  342

seq1  CATCACCAGGGCTGGTCTTGGCAGATGAGGTTAACTGCAGAACACCCAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAGGGCTGGTCTTGGCAGATGAGGTTAACTGCAGAACACCCAAA  392

seq1  GGAAGGGGTTGTAAAGGAAACACATAAAGTATGAAGGGGGCTAGTTGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGTTGTAAAGGAAACACATAAAGTATGAAGGGGGCTAGTTGGGA  442

seq1  AGAGGAAGTGTTCTCAAGTTTACTATGGGGAAAAGAAGTGATAATGGGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTGTTCTCAAGTTTACTATGGGGAAAAGAAGTGATAATGGGGT  492

seq1  GTATGGATG-AATATGATCACAATACACTATATATATATATTTTAAAATT  545
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATGAAATATGATCACAATACACTATATATATATATTTTAAAATT  542

seq1  TATAAAAAATTAAAAATTCATTGACTAATTGTGTAAAATTTAATATTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAATTAAAAATTCATTGACTAATTGTGTAAAATTTAATATTAAA  592

seq1  AAGATTTAATGTTTAAATAATGTTTAAAAAGAATCCAGGAACTCAGTATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAATGTTTAAATAATGTTTAAAAAGAATCCAGGAACTCAGTATT  642

seq1  CCAAAAGAAATATGAAACTCTTTTAACTAGCATGAAAAAATATACTTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGAAATATGAAACTCTTTTAACTAGCATGAAAAAATATACTTGGT  692

seq1  AGCTTAATTCATAACATTTAAAATAGTATTTCATGAATACTTCATAAGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATTCATAACATTTAAAATAGTATTTCATGAATACTTCATAAGTA  742

seq1  TCAAAATACTGATTTTTTTTTCTTAGTGTTTTATGCTTAGGTAATTCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACTGATTTTTTTTTCTTAGTGTTTTATGCTTAGGTAATTCATT  792

seq1  GTTTGTCTTGTGATGCCATTCTTCCTCATTTTACTAAATGTATAATTTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTGTGATGCCATTCTTCCTCATTTTACTAAATGTATAATTTTA  842

seq1  GATGATGACAGAAGCGAATGGTTTCTTGCACAATAATCATTGTGCATTAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGACAGAAGCGAATGGTTTCTTGCACAATAATCATTGTGCATTAC  892

seq1  CAGATTGGGTAGCAGATGTTGTTAGTTTAGTATTTTAGATTCTGGCCTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGGTAGCAGATGTTGTTAGTTTAGTATTTTAGATTCTGGCCTTG  942

seq1  CTCTGGGTATAGGTTGGATTCATGAAAATTATCATACTGACAAATATTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTATAGGTTGGATTCATGAAAATTATCATACTGACAAATATTTA  992

seq1  TGGAGTAACTACTATACAGCATGGTAATGGTCTTAAATGAAACAGAAATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAACTACTATACAGCATGGTAATGGTCTTAAATGAAACAGAAATA  1042

seq1  ACTGGAGATTCACAGAAACTAAGACCTATCAAGGAATAATGATATTAGTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGATTCACAGAAACTAAGACCTATCAAGGAATAATGATATTAGTC  1092

seq1  AAATAGATATACAGTTTGTTGTTTATTCCTACATATTAAAAAATACAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATATACAGTTTGTTGTTTATTCCTACATATTAAAAAATACAGAA  1142

seq1  TTC  1148
      |||
seq2  TTC  1145