BAC Information

Click to search

BAC

Clone NameB6Ng01-100O21
Chromosome9 (Build37)Y (Build37)
Map Location 111,126,877 - 111,128,0502,652,636 - 2,652,692
singlet/doubletsingletsinglet
Overlap geneLrrfip2
Upstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275
Downstream geneMlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100O21.bB6Ng01-100O21.g
ACCDH910279DH910280
length1,150969
definitionDH910279|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O21, 5' end.DH910280|Mus musculus domesticus DNA, BAC clone: B6Ng01-100O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,126,877 - 111,128,050)(2,652,636 - 2,652,692)
sequence
gaattcaggctgagtgacgtcagtggaaaggaagaggtgccttctaggtg
tgaagagctggatgaccagattgtagctgagaaacgataagagatctgca
ttcctgcccatacaattgttgcttctattagaagatgcacaggatcttct
cagctcaggatgtagtttccatatccttaaagtgaagggctagtgactct
aaaaaagggacaattatcattcacttttgagttaattttattatctagtt
ccaaggctagatttattaagaggctttgattcattagattttttcctcaa
tatagtttctgtaaacactttgagctatagtaatcattcccatgaaacca
ccttgattctgacaaatgagaatcacaaaccctataaagtggttacagca
ggggcaggggtatcttgaactgggctctttaaagatgaaagttcttaagg
actttatattctggaaccaggtatgaaagtacctgcctggaatcccagca
ctcaaagaggcccaatgaggatgattgtgaggtggaggccagccgggcta
catcgatcctttctctcaaaaaactagaagaaagttctgtatcccagagt
atctcatcttgagaaaagaagagcaagactgtacatggtagccatgactt
gtcctaaaggcttctttaacatcgactgccctcagccaatcgtggatggc
agaaaggtgtgttttagtaggtagattcaggcggattccctgcctgcctg
cactgtccctccctcctcccttgagcttgtctgaggcttcattcacaggt
aagcagcagatgaaaacgcacggaacagcacagtgggtgtgaagactgag
gagcctagtctttggagtacaggcttggacttgctctgccccatgtagca
aagtttaatatacactccccatattgttttctaaaacttttatataattt
aaatatcttaccctcaaaaaaaaaaaaaggtttttcctcaaacataaatt
tgagtgaaacagactctccactgctgaaccacatctcactgaatgtaaca
ctctgttagaagaggaggactggcaatgtttgagctgcattcaacttgaa
gcctgggttttgaggtctccgaccatgttcattggccgaatggccatcct

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
tgtaggaagccgccctcacattcgccgttgcaagatggcgctgacatcct
gtgttctaagtggtaaacaaataatctgcgcatgtgccaagggtagttcc
ctaccccatgtgctctgccttccccgtgacgacaactcggccgatgggct
gcagccaatcagggagtggcacgtcctaggcggaggataattctccttaa
aagggacggggtttcgccattctctctcttgctctggctcttgcttcttg
ctcctgaagatgtaagcagtaaagctcttgcttttgctcttgcactcttg
cgctcttgcgctctggctcctaaagatgtaagcaatagagctcttgctct
cttgcactcttgctcctgaagatgtaagcaataaagttttgccgcagaag
attccggtttgttgcgttcttcctggccggtcgcgagaacgcatgtaaga
ctgggcatatatccagaagatgtcccaaccggtaagaaggacacatgctc
cactatgttcatagcagccttgtttataatagccagaagctggaaagaac
ccagatgcccctcaacagaggaatggatacagaaaatgtggtacatttac
acaatggattactactcagctattaaaaaaatgatttatgaattcctagg
caaatggatggacctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111126877_111128050
seq2: B6Ng01-100O21.b_48_1197 (reverse)

seq1  AGGATGGCCATTCTGAGCACTGAGACACTTGCTGGAGACCTCAAAAACCC  50
      ||||||||||||| |  || ||| ||| | |  ||||||||| |||||||
seq2  AGGATGGCCATTC-GGCCAATGA-ACA-TGGTCGGAGACCTC-AAAACCC  46

seq1  AAGTGCCTTCTCCAAAGTGTGATGCAGGCTTCAGAGACCAATGGCCAAGG  100
      |   | ||||    ||||   ||||||   ||| |     || ||||   
seq2  A---GGCTTC----AAGTTGAATGCAG--CTCAAA----CATTGCCA---  80

seq1  TTCCTCCTCTTCTTACCAGAGTGTTTACATTTCAGTGAGGATGT-GTTCA  149
       ||||||||||| || ||||||| ||||| |||||||| ||||| |||||
seq2  GTCCTCCTCTTC-TAACAGAGTG-TTACA-TTCAGTGA-GATGTGGTTCA  126

seq1  GCAGTGGGGAGTCTGTTTCACTCAAATTTATGTTTGGAGGAAAAACCTTT  199
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGTGGAGAGTCTGTTTCACTCAAATTTATGTTT-GAGGAAAAACCTTT  175

seq1  TTTTTTTTTTGAGGGTAAGATATTTAAATTATATAAAAGTTTTAGAAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGAGGGTAAGATATTTAAATTATATAAAAGTTTTAGAAAAC  225

seq1  AATATGGGGAGTGTATATTAAACTTTGCTACATGGGGCAGAGCAAGTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGGGAGTGTATATTAAACTTTGCTACATGGGGCAGAGCAAGTCCA  275

seq1  AGCCTGTACTCCAAAGACTAGGCTCCTCAGTCTTCACACCCACTGTGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTACTCCAAAGACTAGGCTCCTCAGTCTTCACACCCACTGTGCTG  325

seq1  TTCCGTGCGTTTTCATCTGCTGCTTACCTGTGAATGAAGCCTCAGACAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGCGTTTTCATCTGCTGCTTACCTGTGAATGAAGCCTCAGACAAG  375

seq1  CTCAAGGGAGGAGGGAGGGACAGTGCAGGCAGGCAGGGAATCCGCCTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGAGGAGGGAGGGACAGTGCAGGCAGGCAGGGAATCCGCCTGAA  425

seq1  TCTACCTACTAAAACACACCTTTCTGCCATCCACGATTGGCTGAGGGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTACTAAAACACACCTTTCTGCCATCCACGATTGGCTGAGGGCAG  475

seq1  TCGATGTTAAAGAAGCCTTTAGGACAAGTCATGGCTACCATGTACAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTTAAAGAAGCCTTTAGGACAAGTCATGGCTACCATGTACAGTCT  525

seq1  TGCTCTTCTTTTCTCAAGATGAGATACTCTGGGATACAGAACTTTCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCTTTTCTCAAGATGAGATACTCTGGGATACAGAACTTTCTTCT  575

seq1  AGTTTTTTGAGAGAAAGGATCGATGTAGCCCGGCTGGCCTCCACCTCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTGAGAGAAAGGATCGATGTAGCCCGGCTGGCCTCCACCTCACA  625

seq1  ATCATCCTCATTGGGCCTCTTTGAGTGCTGGGATTCCAGGCAGGTACTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTCATTGGGCCTCTTTGAGTGCTGGGATTCCAGGCAGGTACTTT  675

seq1  CATACCTGGTTCCAGAATATAAAGTCCTTAAGAACTTTCATCTTTAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGGTTCCAGAATATAAAGTCCTTAAGAACTTTCATCTTTAAAGA  725

seq1  GCCCAGTTCAAGATACCCCTGCCCCTGCTGTAACCACTTTATAGGGTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTCAAGATACCCCTGCCCCTGCTGTAACCACTTTATAGGGTTTG  775

seq1  TGATTCTCATTTGTCAGAATCAAGGTGGTTTCATGGGAATGATTACTATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCATTTGTCAGAATCAAGGTGGTTTCATGGGAATGATTACTATA  825

seq1  GCTCAAAGTGTTTACAGAAACTATATTGAGGAAAAAATCTAATGAATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGTGTTTACAGAAACTATATTGAGGAAAAAATCTAATGAATCAA  875

seq1  AGCCTCTTAATAAATCTAGCCTTGGAACTAGATAATAAAATTAACTCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTAATAAATCTAGCCTTGGAACTAGATAATAAAATTAACTCAAA  925

seq1  AGTGAATGATAATTGTCCCTTTTTTAGAGTCACTAGCCCTTCACTTTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGATAATTGTCCCTTTTTTAGAGTCACTAGCCCTTCACTTTAAG  975

seq1  GATATGGAAACTACATCCTGAGCTGAGAAGATCCTGTGCATCTTCTAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAAACTACATCCTGAGCTGAGAAGATCCTGTGCATCTTCTAATA  1025

seq1  GAAGCAACAATTGTATGGGCAGGAATGCAGATCTCTTATCGTTTCTCAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACAATTGTATGGGCAGGAATGCAGATCTCTTATCGTTTCTCAGC  1075

seq1  TACAATCTGGTCATCCAGCTCTTCACACCTAGAAGGCACCTCTTCCTTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTGGTCATCCAGCTCTTCACACCTAGAAGGCACCTCTTCCTTTC  1125

seq1  CACTGACGTCACTCAGCCTGAATTC  1174
      |||||||||||||||||||||||||
seq2  CACTGACGTCACTCAGCCTGAATTC  1150

seq1: chrY_2652636_2652692
seq2: B6Ng01-100O21.g_400_456

seq1  CAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAATAGTCTGCG  50
      |||||||||||||| |||| ||||||||| ||||||||||||| ||||||
seq2  CAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCG  50

seq1  CATGTGC  57
      |||||||
seq2  CATGTGC  57