BAC Information

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BAC

Clone NameB6Ng01-101C05
ChromosomeY (Build37)18 (Build37)
Map Location 1,120,566 - 1,120,82931,575,895 - 31,577,051
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101C05.bB6Ng01-101C05.g
ACCDH910422DH910423
length8011,134
definitionDH910422|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C05, 5' end.DH910423|Mus musculus domesticus DNA, BAC clone: B6Ng01-101C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,566 - 1,120,829)(31,575,895 - 31,577,051)
sequence
gaattctcagtttagatatatacccaattttttgattgggttgtttgttg
ttttggtgattaacttcttgagttttttatatattttggatattagcttt
ctattggatgtgggcttactgaagaattttttttcccaatctttacgttg
ccgatttgtcttattgactatgtcctttgccttaaagaaactttccagtt
tcatgaagtcccatttatcaattctttttttttttttttgctttctttct
ttttttttttccattttttattaggtatttagctcatttacatttccaat
gctataccaaaagtctcccatacccacacacccccactccgctacccacc
cactccccccaccccacttggccctggcgttcccctgtactggggcacac
aaagtctgcatgtccaatgggcctctctttccagtgatggccgactaggc
catcttttgatacatatgcagctagagtcaagagctcccgggtactggtt
agttcataatgttgttccacctatagggttgcagatccctttagctcctt
gggtaccctctctagctcctccattgggagccctgtgatccatccatcag
ctgactgtgagcatccacctctgtgtttgccaggcctcggcatagtctca
caagagacacctacatctgggtccttttgataaaatcttgctagtatatg
caatggtgtcagcgtttggatgctgattctgggggtggatccctggatat
ggcagtccctacatggtccatcctttcatctcagctccaaactttgtctc
t
gaattccaaataattgataattaaaatataattgaaacaagatttaatca
gatatgaattagaccatgaactatttaatgcattcaagacacaatctttt
gaccctctacaggcctccatggcatgcatttctaacttgtctcattgcag
taatactgaaatggggacaatatgctttataaaaatcagaaagagatttt
tctttgtttagctgtatgtacctttgagtggtcacttcccctttgtggag
atgattgctgggacagtaattgccatcctcatagaaaatgatgcaataca
aatcatatctccaaagacgatcctgtcatccttttcaaagtcttgaaact
ttgacacacatggaaattgtaatcagactgaataatgatatcagaaattt
gtatcttttaaattgtgtttgtttttttttaattcaacatatgtatgttg
gtgttaaatgttaatatttattcagaaccccccaaacaataatgcaatat
gctagatctctcctactatggcccatggtacaatttctgtttccacataa
atactgtggagttggtagaacttcaaagccatgggaaagagttcacagga
gtttcttacaccaccctttctcttttacctcataaattctgtttgttaaa
gaacagacccaatgaatctctacaaaagactggttgttcttattgacaag
gtgcactgcattgtgttgcctctcttttcaattccagtaaattaggtggt
gctagtcttcagcttgaatcttcttccccaaggacatggttcactactct
ataaaacattccatgagagttgtttaaactaaaaatgtaaacatcccaaa
aatcccttaaatataaaaaaagaaagcacacactgtatttgttttgcttt
tcaaggtttctatgataccaaactatgatggtatatctagccactcacta
ttagagctagataggtttaaaatgatatcaccaacccatacccagtgact
ttattgtgacgtagttattgtcctcagttaatcattgatcttcctacagg
gtacacactgtttgcaacagtttagcatttatttttcctcatttaatttc
ctactccttgtgtgtaagagaaggtggtgtgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120566_1120829
seq2: B6Ng01-101C05.b_265_542

seq1  TCTTTTTTTTTTTT---------TTTTAATTTTTTTTTCCATTTTTTATT  41
      ||||||||||||||         |||   |||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTGCTTTCTTTCTTTTTTTTTTTCCATTTTTTATT  50

seq1  AGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATA  91
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  AGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCTCCCATA  100

seq1  TCCACCCACCCCCACTCCCCTGCCCACCCACTCC-----CCCTTTTTGGC  136
       |||| |||||||||||| || ||||||||||||     |||   |||||
seq2  CCCACACACCCCCACTCCGCTACCCACCCACTCCCCCCACCCCACTTGGC  150

seq1  CCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGC  186
      |||||  |||||||||||||||||| | ||||| |||| |||||||||||
seq2  CCTGGCGTTCCCCTGTACTGGGGCACACAAAGTCTGCATGTCCAATGGGC  200

seq1  CTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGC  236
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGC  250

seq1  TAGAGTCAAGAGCTCCGGGGTACTGGTT  264
      |||||||||||||||| |||||||||||
seq2  TAGAGTCAAGAGCTCCCGGGTACTGGTT  278

seq1: chr18_31575895_31577051
seq2: B6Ng01-101C05.g_69_1202

seq1  GAATTCCAAATAATTGATAATTAAAATATAATTGAAACAAGATTTAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAATTGATAATTAAAATATAATTGAAACAAGATTTAATCA  50

seq1  GATATGAATTAGACCATGAACTATTTAATGCATTCAAGACACAATCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAATTAGACCATGAACTATTTAATGCATTCAAGACACAATCTTTT  100

seq1  GACCCTCTACAGGCCTCCATGGCATGCATTTCTAACTTGTCTCATTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCTACAGGCCTCCATGGCATGCATTTCTAACTTGTCTCATTGCAG  150

seq1  TAATACTGAAATGGGGACAATATGCTTTATAAAAATCAGAAAGAGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGAAATGGGGACAATATGCTTTATAAAAATCAGAAAGAGATTTT  200

seq1  TCTTTGTTTAGCTGTATGTACCTTTGAGTGGTCACTTCCCCTTTGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTAGCTGTATGTACCTTTGAGTGGTCACTTCCCCTTTGTGGAG  250

seq1  ATGATTGCTGGGACAGTAATTGCCATCCTCATAGAAAATGATGCAATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGCTGGGACAGTAATTGCCATCCTCATAGAAAATGATGCAATACA  300

seq1  AATCATATCTCCAAAGACGATCCTGTCATCCTTTTCAAAGTCTTGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATCTCCAAAGACGATCCTGTCATCCTTTTCAAAGTCTTGAAACT  350

seq1  TTGACACACATGGAAATTGTAATCAGACTGAATAATGATATCAGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACACATGGAAATTGTAATCAGACTGAATAATGATATCAGAAATTT  400

seq1  GTATCTTTTAAATTGTGTTTGTTTTTTTTTAATTCAACATATGTATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTTAAATTGTGTTTGTTTTTTTTTAATTCAACATATGTATGTTG  450

seq1  GTGTTAAATGTTAATATTTATTCAGAACCCCCCAAACAATAATGCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAATGTTAATATTTATTCAGAACCCCCCAAACAATAATGCAATAT  500

seq1  GCTAGATCTCTCCTACTATGGCCCATGGTACAATTTCTGTTTCCACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATCTCTCCTACTATGGCCCATGGTACAATTTCTGTTTCCACATAA  550

seq1  ATACTGTGGAGTTGGTAGAACTTCAAAGCCATGGGAAAGAGTTCACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGGAGTTGGTAGAACTTCAAAGCCATGGGAAAGAGTTCACAGGA  600

seq1  GTTTCTTACACCACCCTTTCTCTTTTACCTCATAAATTCTGTTTGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTACACCACCCTTTCTCTTTTACCTCATAAATTCTGTTTGTTAAA  650

seq1  GAACAGACCCAATGAATCTCTACAAAAGACTGGTTGTTCTTATTGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACCCAATGAATCTCTACAAAAGACTGGTTGTTCTTATTGACAAG  700

seq1  GTGCACTGCATTGTGTTGCCTCTCTTTTCAATTCCAGTAAATTAGGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGCATTGTGTTGCCTCTCTTTTCAATTCCAGTAAATTAGGTGGT  750

seq1  GCTAGTCTTCAGCTTGAATCTTCTTCCCCAAGGACATGGTTCACTACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTTCAGCTTGAATCTTCTTCCCCAAGGACATGGTTCACTACTCT  800

seq1  ATAAAACATTCCATGAGAGTTGTTTAAACTAAAAATGTAAACATCCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATTCCATGAGAGTTGTTTAAACTAAAAATGTAAACATCCCAAA  850

seq1  AATCCCTTAAATATAAAAAAAAGAAAAGCACAACACTGTAATTTGTTTTG  900
      |||||||||||||||||||||   ||||||| ||||||| ||||||||||
seq2  AATCCCTTAAATATAAAAAAA--GAAAGCAC-ACACTGT-ATTTGTTTTG  896

seq1  CTTTTCAAGGGTTTCTATGAATACCAAAACTATGATGGTAATATCTAGCC  950
      |||||||| |||||||||| ||||| ||||||||||||| ||||||||||
seq2  CTTTTCAA-GGTTTCTATG-ATACC-AAACTATGATGGT-ATATCTAGCC  942

seq1  AACTCACCTAATTAGAGCTAGATAAGGTTTAAAAATGATATCACCAACCC  1000
       ||||||   ||||||||||||| |||||| |||||||||||||||||||
seq2  -ACTCAC--TATTAGAGCTAGAT-AGGTTT-AAAATGATATCACCAACCC  987

seq1  ATACCCATGTGACTTTATTGTGACGTAGTTAATTGTCCTCAGTT-ATCAT  1049
      ||||||| |||||||||||||||||||||| ||||||||||||| |||||
seq2  ATACCCA-GTGACTTTATTGTGACGTAGTT-ATTGTCCTCAGTTAATCAT  1035

seq1  TGATCTTTCCTACAGTGTTACACACTGTTTGCAAACAGTTTTAGCATTTA  1099
      ||||| ||||||||| | |||||||||||||| ||||| |||||||||||
seq2  TGATC-TTCCTACAG-GGTACACACTGTTTGC-AACAG-TTTAGCATTTA  1081

seq1  TTTTTCCTCATTAGATTTTCTCTATCTCTCTGTGTTTGAAGAGAAGGTTG  1149
      ||||||||||||  |||| ||    |||  ||||| | ||||||||| ||
seq2  TTTTTCCTCATTTAATTTCCT---ACTCCTTGTGTGT-AAGAGAAGG-TG  1126

seq1  GTGTGAGA  1157
      |||||| |
seq2  GTGTGAAA  1134