BAC Information

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BAC

Clone NameB6Ng01-102I24
ChromosomeY (Build37)
Map Location 502,893 - 636,757
singlet/doubletdoublet
Overlap geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102I24.bB6Ng01-102I24.g
ACCDH911421DH911422
length1,2061,096
definitionDH911421|Mus musculus domesticus DNA, BAC clone: B6Ng01-102I24, 5' end.DH911422|Mus musculus domesticus DNA, BAC clone: B6Ng01-102I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(635,554 - 636,757)(502,893 - 503,976)
sequence
gaattcatataagaaaacatgtactatttttcttttaagtctgaattatg
tcactctggttatttccagccccatccatttttctgcaaatttccttttt
atttttctttacaggtggatacaatttcattgcacatgtgtaccacattt
ttttaccatccattcatccactggccgacatgcaacatttttccatattc
tgtctaagtcatatgtccagtccttactggctaattatgaatagaacact
agtgaccatagataaacacatatttctatcgtaggatgtagagtactttg
ggataaatgcccagaagtgatatagctagatcatgtgacagttctatttg
cagattttttgaagaacctccaaatattaaaattgaaaaaaattcaacaa
aatagagaccagctgataaagatactgcatatcagtcttgggcctgcaca
catgtttgtacatgagcacatactaaacatggggttggggcaggaaatgc
ttttgaaactttacttgaaagaaaaaaaggctgaggagttctgagaatga
tgaagagattattataacattaaatcaggagtgttacataattcagttcc
gttgttcttaagtttagtatatacaataatagtttgaaagagcttgtttg
cctgccaaatcacacaaaaagattctcagctaagtaagtatatttaaaac
cttaaagatttactgttctagctctataaaaggtggatgcataactgtga
ttcccacatttcacccaaacagctatgggaacattgtaattgaagccatc
cgggttcacacagtagcaaaattttgtttgacaaaaaaagcatctctact
aagtctgcaagagataccatgggtagctctggaaactatacttttttacc
tggtcctggctctggagtgacactactgttatcagagttagagatgaata
ttcttacatgcttttgcctgttctttctctctacaaaatatagctcaaga
taatttgctcaaagggttggtatatactggttttcctcagaatggtactg
actttaaccataggaatcagtttggtttctacagcctacatgaaaaaatt
atttaaagaataccaagtttatacatttaaactaacttaataaacctgga
acatatgcctgaattaaattgcattttttggaaggttaacctgggagaaa
tattct
gaattccaaaaatttgtacttgggcaaactcttatttgtctcatcttcaa
gcacaaaaagaaaatgtgcttgtatgatctggaagaagattggtgcattt
catctaccaatttatgttaattcactattgtcaggtgtggtgtgatatgc
atgcttttaataccagcacttgggaagagaggtagaattcctgttagtct
gaggccagctttgtctacgtagtataaacaccaggccagctagaactgta
gttaaaaactctgtctcagaaaacaaaacaaagcaaaacaaaagaaagca
aaacaaaacaaaacataatacaacagactttcagtgactggaaagataac
tcagcgattaagtgacattgctgttcttccagttgacgtaagttcaattc
ccaacacccaggtcagacagttcacaatctaattccacctacagatgcat
gcacacacacaaagaagtatgtcttttaaaatgtagttgtaataggaaaa
ggttttacagaaaacttccgttgacagtcaagaaaaacacctgaatattt
tgtattattaatcagaaatttagagatggataaatatctcaaacgtaata
gcatggtctgctcttctagaggaccagaatccaattccaagcaaccatgt
ggcagctcatgacgatatgaaactccagttctaggggaaccaatgcctta
ttctagcctacacggaaactaagcatgctgttcatatacagatatatagt
gaggaatctcaaatgcacataaagtaaaaataatctttttaaaaaaaagc
aatggacaggccttttttctattgtgtagtagaagaatttcaatttatat
tttaaggcattagtgtcaaattaaaaaattcattaactgcctcaaaatgt
ggtaattaccatataataaaaaataagtacagaagctggagagaaggctc
ccgttaaaggactgggctgctcctctttagtacctaggtttcactcccaa
cacaattatcatgggctcacaactctgaaattccaagttccagggaattc
tgcttcccttccctttccccacccctttacaccccattcttctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_635554_636757
seq2: B6Ng01-102I24.b_46_1251 (reverse)

seq1  AGAATATCT---CCAGGTTAAACTTTTCAAAAATTACAATTAAAATTTAA  47
      ||||||| |   ||||||| ||| || |||||| | ||||| ||  || |
seq2  AGAATATTTCTCCCAGGTT-AACCTTCCAAAAAATGCAATTTAA--TTCA  47

seq1  AGCATATGCTCAAGTTTTATAAAGTAGATTAAAATGTTATTAAAACTTGG  97
       ||||||| || || ||||| ||||   || ||||| |||  ||||||||
seq2  GGCATATGTTCCAGGTTTATTAAGTTAGTTTAAATG-TAT--AAACTTGG  94

seq1  TATTTCTTTAAATAATTTTTTTCATGTA-GCTGTTAAGAAA-CAAACTGA  145
      || |||||||||||| |||||||||||| |||||  ||||| ||||||||
seq2  TA-TTCTTTAAATAA-TTTTTTCATGTAGGCTGT--AGAAACCAAACTGA  140

seq1  TTCCTAT-GTTAAAGTCAGTACCA-TCTGA-GAAAACAAGTATATA-CAA  191
      ||||||| |||||||||||||||| ||||| |||||| |||||||| |||
seq2  TTCCTATGGTTAAAGTCAGTACCATTCTGAGGAAAACCAGTATATACCAA  190

seq1  ACCTTTGAGCAAATTATCTTTGAGCTATA-TTTGTAGAGAGAAAGAACAG  240
       ||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  CCCTTTGAGCAAATTATC-TTGAGCTATATTTTGTAGAGAGAAAGAACAG  239

seq1  GCAAAAGCATGTAAGAATATTCATCTCTAACTCTGATAACAGTAGTGTCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCATGTAAGAATATTCATCTCTAACTCTGATAACAGTAGTGTCA  289

seq1  CTCCAGAGCCAGGACCAGGT-AAAAAGTATAGTTTCCAGAGCTA-CCATG  338
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  CTCCAGAGCCAGGACCAGGTAAAAAAGTATAGTTTCCAGAGCTACCCATG  339

seq1  GTATCTCTTGCAGACTTAGTAGAGATGC-TTTTTTGTCAAACAAAATTTT  387
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTATCTCTTGCAGACTTAGTAGAGATGCTTTTTTTGTCAAACAAAATTTT  389

seq1  GCTACTGTGTGAACCCGGATGGCTTCAATTACAATGTTCCCATAGCTGTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTGTGAACCCGGATGGCTTCAATTACAATGTTCCCATAGCTGTT  439

seq1  TGGGTGAAATGTGGGAATCACAGTTATGCATCCACCTTTTATAGAGCTAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAATGTGGGAATCACAGTTATGCATCCACCTTTTATAGAGCTAG  489

seq1  AACAGTAAATCTTTAAGGTTTTAAATATACTTACTTAGCTGAGAATCTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAATCTTTAAGGTTTTAAATATACTTACTTAGCTGAGAATCTTT  539

seq1  TTGTGTGATTTGGCAGGCAAACAAGCTCTTTCAAACTATTATTGTATATA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGATTTGGCAGGCAAACAAGCTCTTTCAAACTATTATTGTATATA  589

seq1  CTAAACTTAAGAACAACGGAACTGAATTATGTAACACTCCTGATTTAATG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTAAGAACAACGGAACTGAATTATGTAACACTCCTGATTTAATG  639

seq1  TTATAATAATCTCTTCATCATTCTCAGAACTCCTCAGCCTTTTTTTCTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAATCTCTTCATCATTCTCAGAACTCCTCAGCCTTTTTTTCTTT  689

seq1  CAAGTAAAGTTTCAAAAGCATTTCCTGCCCCAACCCCATGTTTAGTATGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAGTTTCAAAAGCATTTCCTGCCCCAACCCCATGTTTAGTATGT  739

seq1  GCTCATGTACAAACATGTGTGCAGGCCCAAGACTGATATGCAGTATCTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTACAAACATGTGTGCAGGCCCAAGACTGATATGCAGTATCTTT  789

seq1  ATCAGCTGGTCTCTATTTTGTTGAATTTTTTTCAATTTTAATATTTGGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGGTCTCTATTTTGTTGAATTTTTTTCAATTTTAATATTTGGAG  839

seq1  GTTCTTCAAAAAATCTGCAAATAGAACTGTCACATGATCTAGCTATATCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAAAAAATCTGCAAATAGAACTGTCACATGATCTAGCTATATCA  889

seq1  CTTCTGGGCATTTATCCCAAAGTACTCTACATCCTACGATAGAAATATGT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGCATTTATCCCAAAGTACTCTACATCCTACGATAGAAATATGT  939

seq1  GTTTATCTATGGTCACTAGTGTTCTATTCATAATTAGCCAGTAAGGACTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTATGGTCACTAGTGTTCTATTCATAATTAGCCAGTAAGGACTG  989

seq1  GACATATGACTTAGACAGAATATGGAAAAATGTTGCATGTCGGCCAGTGG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATGACTTAGACAGAATATGGAAAAATGTTGCATGTCGGCCAGTGG  1039

seq1  ATGAATGGATGGTAAAAAAATGTGGTACACATGTGCAATGAAATTGTATC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGATGGTAAAAAAATGTGGTACACATGTGCAATGAAATTGTATC  1089

seq1  CACCTGTAAAGAAAAATAAAAAGGAAATTTGCAGAAAAATGGATGGGGCT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTAAAGAAAAATAAAAAGGAAATTTGCAGAAAAATGGATGGGGCT  1139

seq1  GGAAATAACCAGAGTGACATAATTCAGACTTAAAAGAAAAATAGTACATG  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAACCAGAGTGACATAATTCAGACTTAAAAGAAAAATAGTACATG  1189

seq1  TTTTCTTATATGAATTC  1204
      |||||||||||||||||
seq2  TTTTCTTATATGAATTC  1206

seq1: chrY_502893_503976
seq2: B6Ng01-102I24.g_71_1165

seq1  GAATTCCAAAAATTTGTACTTGGGCAAACTCTTATTTGTCTCATCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAATTTGTACTTGGGCAAACTCTTATTTGTCTCATCTTCAA  50

seq1  GCACAAAAAGAAAATGTGCTTGTATGATCTGGAAGAAGATTGGTGCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAAGAAAATGTGCTTGTATGATCTGGAAGAAGATTGGTGCATTT  100

seq1  CATCTACCAATTTATGTTAATTCACTATTGTCAGGTGTGGTGTGATATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCAATTTATGTTAATTCACTATTGTCAGGTGTGGTGTGATATGC  150

seq1  ATGCTTTTAATACCAGCACTTGGGAAGAGAGGTAGAATTCCTGTTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAATACCAGCACTTGGGAAGAGAGGTAGAATTCCTGTTAGTCT  200

seq1  GAGGCCAGCTTTGTCTACGTAGTATAAACACCAGGCCAGCTAGAACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCTTTGTCTACGTAGTATAAACACCAGGCCAGCTAGAACTGTA  250

seq1  GTTAAAAACTCTGTCTCAGAAAACAAAACAAAGCAAAACAAAAGAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAACTCTGTCTCAGAAAACAAAACAAAGCAAAACAAAAGAAAGCA  300

seq1  AAACAAAACAAAACATAATACAACAGACTTTCAGTGACTGGAAAGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACATAATACAACAGACTTTCAGTGACTGGAAAGATAAC  350

seq1  TCAGCGATTAAGTGACATTGCTGTTCTTCCAGTTGACGTAAGTTCAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGATTAAGTGACATTGCTGTTCTTCCAGTTGACGTAAGTTCAATTC  400

seq1  CCAACACCCAGGTCAGACAGTTCACAATCTAATTCCACCTACAGATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCCAGGTCAGACAGTTCACAATCTAATTCCACCTACAGATGCAT  450

seq1  GCACACACACAAAGAAGTATGTCTTTTAAAATGTAGTTGTAATAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACAAAGAAGTATGTCTTTTAAAATGTAGTTGTAATAGGAAAA  500

seq1  GGTTTTACAGAAAACTTCCGTTGACAGTCAAGAAAAACACCTGAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACAGAAAACTTCCGTTGACAGTCAAGAAAAACACCTGAATATTT  550

seq1  TGTATTATTAATCAGAAATTTAGAGATGGATAAATATCTCAAACGTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTAATCAGAAATTTAGAGATGGATAAATATCTCAAACGTAATA  600

seq1  GCATGGTCTGCTCTTCTAGAGGACCAGAATCCAATTCCAAGCAACCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCTGCTCTTCTAGAGGACCAGAATCCAATTCCAAGCAACCATGT  650

seq1  GGCAGCTCATGACGATATGAAACTCCAGTTCTAGGGGAACCAATGCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCATGACGATATGAAACTCCAGTTCTAGGGGAACCAATGCCTTA  700

seq1  TTCTAGCCTACACGGAAACTAAGCATGCTGTTCATATACAGATATATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTACACGGAAACTAAGCATGCTGTTCATATACAGATATATAGT  750

seq1  GAGGAATCTCAAATGCACATAAAGTAAAAATAATCTTTT--AAAAAAAGC  798
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GAGGAATCTCAAATGCACATAAAGTAAAAATAATCTTTTTAAAAAAAAGC  800

seq1  AATGGACAGGCC-TTTTTCTATTGTGTAGTAGAAGAATTTCAATTTATAT  847
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGGCCTTTTTTCTATTGTGTAGTAGAAGAATTTCAATTTATAT  850

seq1  TTTAAGGCATTAGTGTCAAATTAAAAAATTCATTAAACTGCCTCAAAATT  897
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTTAAGGCATTAGTGTCAAATTAAAAAATTCATT-AACTGCCTCAAAA-T  898

seq1  GTGGTAATTACCATATAAT-AAAAATAAGTACAGAAGCTGGAGAGAAGGC  946
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGGTAATTACCATATAATAAAAAATAAGTACAGAAGCTGGAGAGAAGGC  948

seq1  TCCGTTAAAAGGACT-GGCTGCTCCTCTTTAGTACCTAGGTTCAACTCCC  995
      |||  | |||||||| ||||||||||||||||||||||||||  ||||||
seq2  TCCCGTTAAAGGACTGGGCTGCTCCTCTTTAGTACCTAGGTTTCACTCCC  998

seq1  AACACAATTATCAT-GGCTCACAACTCTG-AATTCC-AGTTCCA-GGAAT  1041
      |||||||||||||| |||||||||||||| |||||| ||||||| |||||
seq2  AACACAATTATCATGGGCTCACAACTCTGAAATTCCAAGTTCCAGGGAAT  1048

seq1  TCTGC-TCCCTCCTCTTCCCCCACCCC-TTACACCC--ATCTTCTGG  1084
      ||||| ||||| | ||| ||||||||| ||||||||   ||||||||
seq2  TCTGCTTCCCTTCCCTTTCCCCACCCCTTTACACCCCATTCTTCTGG  1095