BAC Information

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BAC

Clone NameB6Ng01-104H23
ChromosomeY (Build37)3 (Build37)
Map Location 1,120,587 - 1,120,66741,808,100 - 41,809,234
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H23.bB6Ng01-104H23.g
ACCDH912779DH912780
length9951,139
definitionDH912779|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H23, 5' end.DH912780|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,587 - 1,120,667)(41,808,100 - 41,809,234)
sequence
gaattcttttgtgattgggttacctcactcaggatgataccctgcagatc
catccatttgcctatgaatttaataaattcgttctttttaatagctgagt
agtactccattgtgtaaatgtatcacattttctgtatccattcttctgtt
gagggacatcttggttctttccagcttctgactattataaataaggctgc
tatgaacctagtggagaatgtgtccttattactatttggaacatcttctg
gatatatgcctaggagagttattgcgggattcactggtagtactatgtcc
aatttaggaggaaactccagactgatttccagagcgattgtacaagcttg
caatcccaccaacaatggaggagtgttcctctttctccacatccttgcca
gcatctgctgtcacctgaattttttttccattttttattaggtatttaac
tcatttacatttccaatgctataccaaaagtcccccatatccacccaccc
ccactcccctgcccacccactccccctttttggccctggtattcccctgt
actggggcatataaagtttgcaagtccaatgggcctctctttccagtgat
ggccgactaggccatcttttgatatatatgcagctagagtcaagagctcc
ggggtactggttagctcataatgttgttccacctatagggttgcagatcc
ctttagctccttggctactttctctagctcctccattgggagccctatga
tccatccattagctgactgtgagcatccacttctgtgtttgctgggcccc
ggcatagtctcacaagagacagctacatctgcgtcctttcaataaaatct
tgctagtgtatgcaatggtgtcagcgtttggatgctgattatggggtgga
tccctggctatggcagtctctaaagggtccatcctttcatctcagctcaa
actccgtctctgtaactccttccatgggtgtttttgtcccaaatc
gaattcaaaagaaactgaaattgaagaagtttcatgagagaagaacacaa
acagaccgaaatacacatacacagatacacagatatacacagagatatac
atggacacacatgaacacatgcacactcatatgaataaatatctgtatgc
atacagtgccagagaagccttggtgctagattaaaattcttctatgctgt
tgtggctgccatcaccatgctacctgttttatttttgtgtagttcagctt
ctgttcaggatcaataatggctgttcattaactaaagtctcaaacatgca
gtccattgtatataaagaatattttattttgtaggaaatggatatctcaa
taccacttggaatatacaaatttctaccacccatcacttttttctgcctg
cttgttaaattcagtttccatcaagaaaatttacactatagttttcatta
tgtgtacgtcagtatatgtagttgaaaagctctgtcattatctttgtaat
ttgagcttgaatctatctgtcctcttgactgatatacaaaatatgaattt
tcaaatagcctattcaggtcaggtgctctaactgccatttttccccttga
taaacacctcaacctgttttaggccacataataggtcttgaaaagaacag
caattacaattcaaagaaccaaacatcatgtgtgattcaagttcttcaat
actgattatgaggctgagaaacagtttcaaaattcactaattatgattct
gaagagcatggtaagctttcacaacatgtttgttgactggaatgaatact
aaggcctgaattatgactgactaaatcatgatttttttgtgcacataatt
atattaaagttgtatcctattcacttatttttctgcattcattgataaat
ctatcttttttttctgtataagttttaaaacttcctttgaatgagaaaaa
agagaccaacaatcttctcttaattcaaggaaattatgtatcagtgttta
ttaatctgtggtgggagcatttgggatggcatcttccattattaagtatg
aaatggagctctgataagagtttgggaaaataggaattcttttaatttgg
agagagccaatgcacggctaaggttgcgcattgatacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120587_1120667
seq2: B6Ng01-104H23.b_462_542

seq1  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGC  50

seq1  TATACCAAAAGTCCCCCATATCCACCCACCC  81
      |||||||||||||||||||||||||||||||
seq2  TATACCAAAAGTCCCCCATATCCACCCACCC  81

seq1: chr3_41808100_41809234
seq2: B6Ng01-104H23.g_68_1206

seq1  GAATTCAAAAGAAACTGAAATTGAAGAAGTTTCATGAGAGAAGAACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAAACTGAAATTGAAGAAGTTTCATGAGAGAAGAACACAA  50

seq1  ACAGACCGAAATACACATACACAGATACACAGATATACACAGAGATATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCGAAATACACATACACAGATACACAGATATACACAGAGATATAC  100

seq1  ATGGACACACATGAACACATGCACACTCATATGAATAAATATCTGTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACACATGAACACATGCACACTCATATGAATAAATATCTGTATGC  150

seq1  ATACAGTGCCAGAGAAGCCTTGGTGCTAGATTAAAATTCTTCTATGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGCCAGAGAAGCCTTGGTGCTAGATTAAAATTCTTCTATGCTGT  200

seq1  TGTGGCTGCCATCACCATGCTACCTGTTTTATTTTTGTGTAGTTCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGCCATCACCATGCTACCTGTTTTATTTTTGTGTAGTTCAGCTT  250

seq1  CTGTTCAGGATCAATAATGGCTGTTCATTAACTAAAGTCTCAAACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGATCAATAATGGCTGTTCATTAACTAAAGTCTCAAACATGCA  300

seq1  GTCCATTGTATATAAAGAATATTTTATTTTGTAGGAAATGGATATCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGTATATAAAGAATATTTTATTTTGTAGGAAATGGATATCTCAA  350

seq1  TACCACTTGGAATATACAAATTTCTACCACCCATCACTTTTTTCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTGGAATATACAAATTTCTACCACCCATCACTTTTTTCTGCCTG  400

seq1  CTTGTTAAATTCAGTTTCCATCAAGAAAATTTACACTATAGTTTTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAATTCAGTTTCCATCAAGAAAATTTACACTATAGTTTTCATTA  450

seq1  TGTGTACGTCAGTATATGTAGTTGAAAAGCTCTGTCATTATCTTTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACGTCAGTATATGTAGTTGAAAAGCTCTGTCATTATCTTTGTAAT  500

seq1  TTGAGCTTGAATCTATCTGTCCTCTTGACTGATATACAAAATATGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTGAATCTATCTGTCCTCTTGACTGATATACAAAATATGAATTT  550

seq1  TCAAATAGCCTATTCAGGTCAGGTGCTCTAACTGCCATTTTTCCCCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCCTATTCAGGTCAGGTGCTCTAACTGCCATTTTTCCCCTTGA  600

seq1  TAAACACCTCAACCTGTTTTAGGCCACATAATAGGTCTTGAAAAGAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCTCAACCTGTTTTAGGCCACATAATAGGTCTTGAAAAGAACAG  650

seq1  CAATTACAATTCAAAGAACCAAACATCATGTGTGATTCAAGTTCTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAATTCAAAGAACCAAACATCATGTGTGATTCAAGTTCTTCAAT  700

seq1  ACTGATTATGAGGCTGAGAAACAGTTTCAAAATTCACTAATTATGATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTATGAGGCTGAGAAACAGTTTCAAAATTCACTAATTATGATTCT  750

seq1  GAAGAGCATGGTAAGCTTTCACAACATGTTTGTTGACTGGAATGAATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCATGGTAAGCTTTCACAACATGTTTGTTGACTGGAATGAATACT  800

seq1  AAGGCCTGAATTATGACTGACTAAATCATGATTTTTTTGTGCACATAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGAATTATGACTGACTAAATCATGATTTTTTTGTGCACATAATT  850

seq1  AATATTAAAGTTGTATCCTATTCACTTATTTTTCTGCATTCATTGATAAA  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ATATTAAAGTTGTATCCTATTCACTTATTTTTCTGCATTCATTGATAAA  899

seq1  TCTATCTTTTTTTTCTGTATAAGTTTTAAAACTTCCTTTGAATGAGAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTATCTTTTTTTTCTGTATAAGTTTTAAAACTTCCTTTGAATGAG-AAA  948

seq1  AAAGAGACCAACAATCTTCTCTTAATTCAAGGAAATTATGTATCAAGTGT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGAGACCAACAATCTTCTCTTAATTCAAGGAAATTATGTATC-AGTGT  997

seq1  TTATTACATCTGT-GTGGAGCCATTTGGGATGGCATC-TCCATTTATAAG  1048
      |||||| |||||| ||||   |||||||||||||||| ||||||  ||||
seq2  TTATTA-ATCTGTGGTGGGAGCATTTGGGATGGCATCTTCCATTATTAAG  1046

seq1  TATGAAAATGAGCTCTGAT-AGAGTT--GGGAGATA-GTATTCTTTTACA  1094
      |||||||  |||||||||| ||||||  || | ||| | |||||||||  
seq2  TATGAAATGGAGCTCTGATAAGAGTTTGGGAAAATAGGAATTCTTTTAAT  1096

seq1  TTTGAGA-AGCCCAAATGC-CAGCTA--GTTCTGCATTGATACCT  1135
      || |||| ||||  ||||| | ||||  |||  ||||||||||||
seq2  TTGGAGAGAGCC--AATGCACGGCTAAGGTTGCGCATTGATACCT  1139