BAC Information

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BAC

Clone NameB6Ng01-105E10
Chromosome6 (Build37)Y (Build37)
Map Location 9,876,104 - 9,876,7491,120,597 - 1,120,904
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040238, Nxph1
Downstream geneLOC330264, LOC100040285, LOC667650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E10.bB6Ng01-105E10.g
ACCDH913344DH913345
length646500
definitionDH913344|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E10, 5' end.DH913345|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,876,104 - 9,876,749)(1,120,597 - 1,120,904)
sequence
gaattctaattatctggttcatgtctagttcagttactatgtctcatgca
agtaacttctcaactttaggaacaaatatttagttttagtattaattatg
acatagctgctcttggaaacaatttaaagtattatctcctttaatcttaa
ttattgttttagagaaaggtaaaaaatatgacaggtatatggattaagca
acataaaattcataaatataaagttttctacaggtcaaacatttatcaaa
ttgtagtgcaatgaaaaagtctgattcttgtgttgtcattcctagcttac
agttctgttgtaccttttctttaacaaaacacccctgataaagaagatga
caccattttgattccaacaatgtccatggcaaataaattttaagattcaa
gtaatgtgcctttcactaatgtatgtgttttaatgagttgcctaatttat
tccagaattgctgtacaatattcagatttaaattcctctaaattcatata
agaattattctcattcaaagtcattttatggcactcattgaacaaaaaat
gttatttttaataatgccattcaaacattcatttaaccacaaaaagcaat
atatatatatatatatatatatatatatatggtgtgtgtgtgtgtg

gaattcttgattttagccattctgactggtgtgagatggaatctcatggt
tgttttgatttgcatttccctgatgattaaggatgctgaacattttattt
atttatttatttatttatttatttatttatttatttatttgtttgtttgt
ttgtctgttcgttcgttcatttatttatttatttatttatttatttattt
atttaggtattttcctcgtttacattttcaatgctatcccaaaagtctgc
catacccacccccccaatcccctacccacccactcccactttttggcgct
ggggttcccctgtactggggcatataaagtttgcaagtccaatgggcctc
tctttgcagtgatggccgactaggccatcttttgatacatatgcagctaa
agttaagagctccggggtactggttagttcatattgttgttccacctata
gggttgcagttccctttagctccttgggtaatttctctagctcctccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9876104_9876749
seq2: B6Ng01-105E10.b_40_685 (reverse)

seq1  CACACACACACACACCATATATATATATATATATATATATATATATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCATATATATATATATATATATATATATATATATTG  50

seq1  CTTTTTGTGGTTAAATGAATGTTTGAATGGCATTATTAAAAATAACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTGGTTAAATGAATGTTTGAATGGCATTATTAAAAATAACATTT  100

seq1  TTTGTTCAATGAGTGCCATAAAATGACTTTGAATGAGAATAATTCTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAATGAGTGCCATAAAATGACTTTGAATGAGAATAATTCTTATA  150

seq1  TGAATTTAGAGGAATTTAAATCTGAATATTGTACAGCAATTCTGGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAGAGGAATTTAAATCTGAATATTGTACAGCAATTCTGGAATAA  200

seq1  ATTAGGCAACTCATTAAAACACATACATTAGTGAAAGGCACATTACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAACTCATTAAAACACATACATTAGTGAAAGGCACATTACTTGA  250

seq1  ATCTTAAAATTTATTTGCCATGGACATTGTTGGAATCAAAATGGTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAATTTATTTGCCATGGACATTGTTGGAATCAAAATGGTGTCAT  300

seq1  CTTCTTTATCAGGGGTGTTTTGTTAAAGAAAAGGTACAACAGAACTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATCAGGGGTGTTTTGTTAAAGAAAAGGTACAACAGAACTGTAA  350

seq1  GCTAGGAATGACAACACAAGAATCAGACTTTTTCATTGCACTACAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATGACAACACAAGAATCAGACTTTTTCATTGCACTACAATTTG  400

seq1  ATAAATGTTTGACCTGTAGAAAACTTTATATTTATGAATTTTATGTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTGACCTGTAGAAAACTTTATATTTATGAATTTTATGTTGCT  450

seq1  TAATCCATATACCTGTCATATTTTTTACCTTTCTCTAAAACAATAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATATACCTGTCATATTTTTTACCTTTCTCTAAAACAATAATTAA  500

seq1  GATTAAAGGAGATAATACTTTAAATTGTTTCCAAGAGCAGCTATGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGAGATAATACTTTAAATTGTTTCCAAGAGCAGCTATGTCATA  550

seq1  ATTAATACTAAAACTAAATATTTGTTCCTAAAGTTGAGAAGTTACTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACTAAAACTAAATATTTGTTCCTAAAGTTGAGAAGTTACTTGCA  600

seq1  TGAGACATAGTAACTGAACTAGACATGAACCAGATAATTAGAATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATAGTAACTGAACTAGACATGAACCAGATAATTAGAATTC  646


seq1: chrY_1120597_1120904
seq2: B6Ng01-105E10.g_262_569

seq1  ATTT-TTTA-TTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAA  48
      |||| |||| ||||||||||  ||| ||||||||| ||||||||| ||||
seq2  ATTTATTTATTTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCCAA  50

seq1  AAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCT  98
      |||||  ||||| |||||  |||||| |||||| ||||||||||||| ||
seq2  AAGTCTGCCATACCCACC--CCCCCAATCCCCTACCCACCCACTCCCACT  98

seq1  TTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCC  148
      ||||||| ||||  ||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCGCTGGGGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCC  148

seq1  AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATAT  198
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATACAT  198

seq1  ATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGT  248
      ||||||||| ||| ||||||||||||||||||||||| |||||  |||||
seq2  ATGCAGCTAAAGTTAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGT  248

seq1  TCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAG  298
      |||||||||||||||| || ||||||||||||||||| || |||||||||
seq2  TCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAATTTCTCTAG  298

seq1  CTCCTCCATT  308
      ||||||||||
seq2  CTCCTCCATT  308


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