BAC Information

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BAC

Clone NameB6Ng01-105E13
Chromosome8 (Build37)Y (Build37)
Map Location 101,340,691 - 101,341,6161,120,587 - 1,120,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105E13.bB6Ng01-105E13.g
ACCDH913350DH913351
length931552
definitionDH913350|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E13, 5' end.DH913351|Mus musculus domesticus DNA, BAC clone: B6Ng01-105E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,340,691 - 101,341,616)(1,120,587 - 1,120,845)
sequence
gaattcactgtcctaccgcctctagtaaacaagatgtctgctccgtttca
gatgcaaacaaaaggaaaagaactataggtggatcacaataaagtgcttt
gggtgttgttcagtgggcatttggggaaagattaaaggggaggggtggag
agactgaaaattatatcttctaaagaaaacattgactagatagcccatga
caactgcattgtagtgctctggaaaactttactgaagaaatagtttttct
tttatcaccgtgctacctttcttctctaccaaaccatctatcaatctatt
tattaattaatacattagtctatacacctaatagctaccaaacttacact
ccattttactgccttcctatattttctaattacttaagttttcatgctta
ctgaattagcataatattataaaagagtcaccattttaataaatcattaa
tgtaaattacagactttttcaaatctgaagaaatgtaaggaatttgaatg
cagagataaagagaatgagtaacattagtggttaattctcacaacgctcc
acaatgaatgcgtttgtatgtagagagtgtgggtcttctttagttttgct
aaggtctcctgttgatacaattgaaaatgagaatgcgaattttcatcagt
atttgcaaccctgcattttagtacagtcaaacctccttctttcatcatag
caatcatttgagattgtcttaaggtttacatcgctacctttttttctaga
agattactattcttttctgatttatcctttacacaatttctctttctcaa
aatcatttcagctgtttgattttcacttaaaaatatacaaatgtagagaa
gaattagtagctggggtagggaatattttggaccaatataactgtcattt
tagaatgtatgctgacagttgctggagatta
gaattctcatgaacaacaggctcccagataacaattaaatatgacctttc
tattaaaattgaaagtctattgaaatctacagactggggaaaaaaaaaac
cttcactaactccacataaaatacagggataacatccaaaatatataaag
aacacaagaagctaacttccaaaaaaccaaataacccaatcaaaaaatgg
ggtatagacataaacagagaattcacaacagaggaatcttttttttcttc
ttctttttttttaattaggtattttcctcatttacattttcaatgctatc
ccaaaggtcccccatacccacacccccaatcccctacccacccactcccc
ctttttggccctggagttcccctgtactggggcatacaaagtttgcaagt
ccaatgggcctctctttccagtgatggccgactaggccatcttttgatac
atatgcagctaaagacaagagctcccgggtactggttagttcatattgtt
gttccacctatagggttgtagatccctatagctccttgggtaatttctct
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101340691_101341616
seq2: B6Ng01-105E13.b_43_973

seq1  GAATTCACTGTCCTACCGCCTCTAGTAAACAAGATGTCTGCTCCGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCCTACCGCCTCTAGTAAACAAGATGTCTGCTCCGTTTCA  50

seq1  GATGCAAACAAAAGGAAAAGAACTATAGGTGGATCACAATAAAGTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAACAAAAGGAAAAGAACTATAGGTGGATCACAATAAAGTGCTTT  100

seq1  GGGTGTTGTTCAGTGGGCATTTGGGGAAAGATTAAAGGGGAGGGGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGTTCAGTGGGCATTTGGGGAAAGATTAAAGGGGAGGGGTGGAG  150

seq1  AGACTGAAAATTATATCTTCTAAAGAAAACATTGACTAGATAGCCCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAAATTATATCTTCTAAAGAAAACATTGACTAGATAGCCCATGA  200

seq1  CAACTGCATTGTAGTGCTCTGGAAAACTTTACTGAAGAAATAGTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCATTGTAGTGCTCTGGAAAACTTTACTGAAGAAATAGTTTTTCT  250

seq1  TTTATCACCGTGCTACCTTTCTTCTCTACCAAACCATCTATCAATCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACCGTGCTACCTTTCTTCTCTACCAAACCATCTATCAATCTATT  300

seq1  TATTAATTAATACATTAGTCTATACACCTAATAGCTACCAAACTTACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTAATACATTAGTCTATACACCTAATAGCTACCAAACTTACACT  350

seq1  CCATTTTACTGCCTTCCTATATTTTCTAATTACTTAAGTTTTCATGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTACTGCCTTCCTATATTTTCTAATTACTTAAGTTTTCATGCTTA  400

seq1  CTGAATTAGCATAATATTATAAAAGAGTCACCATTTTAATAAATCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAGCATAATATTATAAAAGAGTCACCATTTTAATAAATCATTAA  450

seq1  TGTAAATTACAGACTTTTTCAAATCTGAAGAAATGTAAGGAATTTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTACAGACTTTTTCAAATCTGAAGAAATGTAAGGAATTTGAATG  500

seq1  CAGAGATAAAGAGAATGAGTAACATTAGTGGTTAATTCTCACAACGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAAAGAGAATGAGTAACATTAGTGGTTAATTCTCACAACGCTCC  550

seq1  ACAATGAATGCGTTTGTATGTAGAGAGTGTGGGTCTTCTTTAGTTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATGCGTTTGTATGTAGAGAGTGTGGGTCTTCTTTAGTTTTGCT  600

seq1  AAGGTCTCCTGTTGATACAATTG-AAATGAGAATGCGAATTTTCATCAGT  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGGTCTCCTGTTGATACAATTGAAAATGAGAATGCGAATTTTCATCAGT  650

seq1  A-TTGCAACCCTGCATTTTAGTACAGTCAAACCTCCTTC-TTCATCATAG  697
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTGCAACCCTGCATTTTAGTACAGTCAAACCTCCTTCTTTCATCATAG  700

seq1  CAATCATTTGAGATTGTCTTAAGATTAACATCGCTACC-TTTTTTCTAGA  746
      ||||||||||||||||||||||| || ||||||||||| |||||||||||
seq2  CAATCATTTGAGATTGTCTTAAGGTTTACATCGCTACCTTTTTTTCTAGA  750

seq1  AGATTACTATTCTCTTCTGATTTATCCTTTACACAATTTCTC-TTCTCAA  795
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  AGATTACTATTCTTTTCTGATTTATCCTTTACACAATTTCTCTTTCTCAA  800

seq1  AATCATTTCAGCTGTTTGATTTTCACTTAAAAATATACAAATGTAGAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCAGCTGTTTGATTTTCACTTAAAAATATACAAATGTAGAGAA  850

seq1  GAATAAGTAGCTGGGGTAGGGAATATTTTGGACCAATATAACTGTCATTT  895
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTAGCTGGGGTAGGGAATATTTTGGACCAATATAACTGTCATTT  900

seq1  TAGTAATGTATGCTGACAGTTGCT-GAGATTA  926
      ||| |||||||||||||||||||| |||||||
seq2  TAG-AATGTATGCTGACAGTTGCTGGAGATTA  931

seq1: chrY_1120587_1120845
seq2: B6Ng01-105E13.g_305_566

seq1  TTTTTTTTC-----CATTTTTT---ATTAGGTATTTAACTCATTTACATT  42
      |||||||||     | ||||||   |||||||||||  ||||||||||||
seq2  TTTTTTTTCTTCTTCTTTTTTTTTAATTAGGTATTTTCCTCATTTACATT  50

seq1  TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG  92
      | ||||||||| ||||| |||||||||| |||  |||||||| |||||| 
seq2  TTCAATGCTATCCCAAAGGTCCCCCATACCCA--CACCCCCAATCCCCTA  98

seq1  CCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATA  142
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CCCACCCACTCCCCCTTTTTGGCCCTGGAGTTCCCCTGTACTGGGGCATA  148

seq1  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  192
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGG  198

seq1  CCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT  242
      ||||||||||||| ||||||||||| || |||||||||| ||||||||||
seq2  CCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTGGT  248

seq1  TAGCTCATAACGTTGTT  259
      ||| |||||   |||||
seq2  TAGTTCATA---TTGTT  262