BAC Information

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BAC

Clone NameB6Ng01-107O18
ChromosomeY (Build37)
Map Location 2,381,897 - 2,402,454
singlet/doubletdoublet
Overlap geneLOC100039568, LOC100041505
Upstream geneZfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2
Downstream geneLOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107O18.bB6Ng01-107O18.g
ACCDH915248DH915249
length1,1031,120
definitionDH915248|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O18, 5' end.DH915249|Mus musculus domesticus DNA, BAC clone: B6Ng01-107O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(2,401,342 - 2,402,454)(2,381,897 - 2,383,031)
sequence
gaattcccctcatgtgctttaaatcaggcccctgaactcactttggggtc
tccatcttgaaatgagagaaacccccagcatgctggacttctgcagaata
aaagatctttgtgtttccattctatttgagtcctggataccattcttcaa
caaatctcaaatctttgtatttagaagttctcacccaggattggctagag
agccaccccccaccccgcccccctgcccctcacgaccatatccacccaaa
gagtgaagtgtttttctgatcagtaattctgggcacccagttgtcttttg
tcttgtccatctctgtgtttgtgctttgggtttaatctttctgtttgagg
cctagagggacaaagtggatgcatgttttgtcaactggcctgagacaatt
gaggacactccccaacccctactagaagcaggagaacttgctagttctca
tctgaattctgaactagctgtgtgtcttataggcctcccatgcacaggga
gaaagatcatcttagacagccttttggttttggtttcccaggaatatcct
cctgtttctgtctgtgttgtattacgtttgtgctttttgtcctcttgtac
aattttttctttgattcctagaatgggacaggcacagtgcatcccactgg
gcttgtccttcaccattctaaggactttcaatgaactgcaaaagacttga
ggctggttgtttgtcctgtaaactcaccaccattgtaggaataaatggcc
cacctatggtctgaggagactttccacctgccgagccccatcatttacag
ggtgaaggtttactttctgagacaagtgccatacatcacctcatggcaat
acttggttgagaagccccctgtttggatgagatatttttgttatgggcct
tgctccccctttctacctaccagtaggatctctgtccagctccttatatt
tctacccatgtccagccagcacagcagaggaggagcagcccctgacttcc
cctcggagtctacctcacactaccagagagcaagtctactacagcttacc
tctctgggctacagatccaaatgctcaggagacatttcgtgcatatggcc
att
gaattcactgccttttctcctaccctgccttgcgaggctgtggcacacaa
ttaaagaatgtcatgagttccattgtggggagtcctcctgaggattgtca
tccagcatacagatgctcacaataagatacaggaggagtctgacatgtgg
aatttcagagaactagagaagcctgtgaaggatgcttaccaggggaccag
aaggaacagagtacccaacatgtcaagtcagatgagaagtgatggttttg
atgaagaaagtcagagactactggaggtcaaagagtgaaatttcttgggt
cctggaagatgattttcttaaggcaaaatccgggaacaagaggttatatg
attatgaatccaatacaaggggcagatggggtcaaagtggttatatagag
ttgtatcctgaagaatttgaaacagacagtagtgatcagcaagacattac
caatggggagaaatacatctcccctggtaaaatcatttgcacctgaatcc
ccaaaacataagtcaaagaaatcccattagaagaagcagaaaaaaaactc
tctctttctctctgtctctgtctctgtctctgtctctgtctctgtctctg
tctctgtctctctctctctctctctctctgtgtttcacaaataaataaat
aaataagtaaataaataagtaaataaataaataaataaataaataaataa
cagaagaaaaataaaaaaaaagctatggacataacagcagattcctcagg
tgtgttctctgaggaaactggagcttctaataccaggaaaataagcaacc
acacaagagcaagaaaaaaatccaggaaaaagtctcctacaaaatctttt
acctttggaggaaaagtgatacttctcagtcagatgatttcccatctagc
atctagcagttctgaggactcaaggaaagtgacactaagaaacccaaagg
aaaagaagagagagtgacttttgttccctgcttgacctgagtacaggaac
tggagtggctatgttgcagtcttgctggatctcagaggattgtctagtgg
ggagagcctgcagttctgttttcaactgaattcttagagggaatccaggt
gactccagcatcagagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2401342_2402454
seq2: B6Ng01-107O18.b_47_1149 (reverse)

seq1  AATGGCACATATGCCACGAAATGTCTCCCCTGAGCATTTGGGATCTTGTA  50
      |||||| |||||| ||||||||||||  ||||||||||| ||||| ||||
seq2  AATGGC-CATATG-CACGAAATGTCT--CCTGAGCATTT-GGATC-TGTA  44

seq1  GCCCAGAGAGGTAAGGCTGTAGTAGACTTGGCTCTCTGGGTAGTGTGAGG  100
      |||||||||||||| |||||||||||||| ||||||| ||||||||||||
seq2  GCCCAGAGAGGTAA-GCTGTAGTAGACTT-GCTCTCT-GGTAGTGTGAGG  91

seq1  TAGACTCCGAGGGG-AGTCAGGGGCTGCTCCTTCCTCTGCCTGTGCTGGC  149
      |||||||||||||| |||||||||||||||| ||||||| ||||||||||
seq2  TAGACTCCGAGGGGAAGTCAGGGGCTGCTCC-TCCTCTG-CTGTGCTGGC  139

seq1  TGGACATGGGTAGAAATATAAGGAGCTGGACAGAGATCCTACTGGTAGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGGGTAGAAATATAAGGAGCTGGACAGAGATCCTACTGGTAGGT  189

seq1  AGAAAGGGGGAGCAAGGCCCATAACAAAAATATCTCATCCAAACAGGGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGGAGCAAGGCCCATAACAAAAATATCTCATCCAAACAGGGGG  239

seq1  CTTCTCAACCAAGTATTGCCATGAGGTGATGTATGGCACTTGTCTCAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAACCAAGTATTGCCATGAGGTGATGTATGGCACTTGTCTCAGAA  289

seq1  AGTAAACCTTCACCCTGTAAATGATGGGGCTCGGCAGGTGGAAAGTCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCTTCACCCTGTAAATGATGGGGCTCGGCAGGTGGAAAGTCTCC  339

seq1  TCAGACCATAGGTGGGCCATTTATTCCTACAATGGTGGTGAGTTTACAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCATAGGTGGGCCATTTATTCCTACAATGGTGGTGAGTTTACAGG  389

seq1  ACAAACAACCAGCCTCAAGTCTTTTGCAGTTCATTGAAAGTCCTTAGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACCAGCCTCAAGTCTTTTGCAGTTCATTGAAAGTCCTTAGAAT  439

seq1  GGTGAAGGACAAGCCCAGTGGGATGCACTGTGCCTGTCCCATTCTAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGACAAGCCCAGTGGGATGCACTGTGCCTGTCCCATTCTAGGAA  489

seq1  TCAAAGAAAAAATTGTACAAGAGGACAAAAAGCACAAACGTAATACAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAAAATTGTACAAGAGGACAAAAAGCACAAACGTAATACAACA  539

seq1  CAGACAGAAACAGGAGGATATTCCTGGGAAACCAAAACCAAAAGGCTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAAACAGGAGGATATTCCTGGGAAACCAAAACCAAAAGGCTGTC  589

seq1  TAAGATGATCTTTCTCCCTGTGCATGGGAGGCCTATAAGACACACAGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGATCTTTCTCCCTGTGCATGGGAGGCCTATAAGACACACAGCTA  639

seq1  GTTCAGAATTCAGATGAGAACTAGCAAGTTCTCCTGCTTCTAGTAGGGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAATTCAGATGAGAACTAGCAAGTTCTCCTGCTTCTAGTAGGGGT  689

seq1  TGGGGAGTGTCCTCAATTGTCTCAGGCCAGTTGACAAAACATGCATCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTGTCCTCAATTGTCTCAGGCCAGTTGACAAAACATGCATCCAC  739

seq1  TTTGTCCCTCTAGGCCTCAAACAGAAAGATTAAACCCAAAGCACAAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTCTAGGCCTCAAACAGAAAGATTAAACCCAAAGCACAAACAC  789

seq1  AGAGATGGACAAGACAAAAGACAACTGGGTGCCCAGAATTACTGATCAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGACAAGACAAAAGACAACTGGGTGCCCAGAATTACTGATCAGA  839

seq1  AAAACACTTCACTCTTTGGGTGGATATGGTCGTGAGGGGCAGGGGGGCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTTCACTCTTTGGGTGGATATGGTCGTGAGGGGCAGGGGGGCGG  889

seq1  GGTGGGGGGTGGCTCTCTAGCCAATCCTGGGTGAGAACTTCTAAATACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGGTGGCTCTCTAGCCAATCCTGGGTGAGAACTTCTAAATACAA  939

seq1  AGATTTGAGATTTGTTGAAGAATGGTATCCAGGACTCAAATAGAATGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGAGATTTGTTGAAGAATGGTATCCAGGACTCAAATAGAATGGAA  989

seq1  ACACAAAGATCTTTTATTCTGCAGAAGTCCAGCATGCTGGGGGTTTCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGATCTTTTATTCTGCAGAAGTCCAGCATGCTGGGGGTTTCTCT  1039

seq1  CATTTCAAGATGGAGACCCCAAAGTGAGTTCAGGGGCCTGATTTAAAGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAGATGGAGACCCCAAAGTGAGTTCAGGGGCCTGATTTAAAGCA  1089

seq1  CATGAGGGGAATTC  1113
      ||||||||||||||
seq2  CATGAGGGGAATTC  1103

seq1: chrY_2381897_2383031
seq2: B6Ng01-107O18.g_72_1187

seq1  TCACTGCCTTTTCTCCTACCCTGCCTTGCGAGGCTGTGGCACACAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCTTTTCTCCTACCCTGCCTTGCGAGGCTGTGGCACACAATTAA  50

seq1  AGAATGTCATGAGTTCCATTGTGGGGAGTCCTCCTGAGGATTGTCATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCATGAGTTCCATTGTGGGGAGTCCTCCTGAGGATTGTCATCCA  100

seq1  GCATACAGATGCTCACAATAAGATACAGGAGGAGTCTGACATGTGGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAGATGCTCACAATAAGATACAGGAGGAGTCTGACATGTGGAATT  150

seq1  TCAGAGAACTACAGAAGCCTGTGAAGGATGCTTACCAGGGGACCAGAAGG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAACTAGAGAAGCCTGTGAAGGATGCTTACCAGGGGACCAGAAGG  200

seq1  AACAGAGTACCCAACATGTCAAGTCAGATGAGAAGTGATGGTTTTGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTACCCAACATGTCAAGTCAGATGAGAAGTGATGGTTTTGATGA  250

seq1  AGAAAGTCAGAGACTACTGGAGGTCAAAGAGTGAAATTTCTTGGGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTCAGAGACTACTGGAGGTCAAAGAGTGAAATTTCTTGGGTCCTG  300

seq1  GAAGATGATTTTCTTAAGGCAAAATCCGGGAACAAGAGGTTATATGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATTTTCTTAAGGCAAAATCCGGGAACAAGAGGTTATATGATTA  350

seq1  TGAATCCAATACAAGGGGCAGATGGGGTCAAAGTGGTTATATAGAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAATACAAGGGGCAGATGGGGTCAAAGTGGTTATATAGAGTTGT  400

seq1  ATCCTGAAGAATTTGAAACAGACAGTAGTGATCAGCAAGACATTACCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAAGAATTTGAAACAGACAGTAGTGATCAGCAAGACATTACCAAT  450

seq1  GGGGAGAAATACATCTCCCCTGGTAAAATCATTTGCACCTGAAAACCCAA  500
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GGGGAGAAATACATCTCCCCTGGTAAAATCATTTGCACCTGAATCCCCAA  500

seq1  AACATAAGTCAAAGAAATCCCATTAGAAGAAGCAGAAAAAAAACTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTCAAAGAAATCCCATTAGAAGAAGCAGAAAAAAAACTCTCTC  550

seq1  TTTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  600

seq1  TGTCTCTCTCTCTCTCTCTCTCTCTGTGTTTCACAAATAAATAAATAAAT  650
      ||||||||||||||||||||||||||||||||||        ||||||||
seq2  TGTCTCTCTCTCTCTCTCTCTCTCTGTGTTTCAC--------AAATAAAT  642

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA  700
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AAATAAATAAGTAAATAAATAAGTAAATAAATAAATAAATAAATAAATAA  692

seq1  ATAACAGAAGAAAAATAAAAAAAAAGCTATGGACATAACAGCAGATTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAAGAAAAATAAAAAAAAAGCTATGGACATAACAGCAGATTCCT  742

seq1  CAGGTGTGTTCTCTGAGGAAACTGGAGCTTCTAATACCAGGAAAATAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGTTCTCTGAGGAAACTGGAGCTTCTAATACCAGGAAAATAAGC  792

seq1  AACCACACAAGAGCAAGAAAAAAATCCAGGAAAAAGTCTCCTACAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAAGAGCAAGAAAAAAATCCAGGAAAAAGTCTCCTACAAAATC  842

seq1  -TTTACCTTTGGAGGAAAAGTGATACTTCTCAGTCAGATGATTTCCCATC  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTTGGAGGAAAAGTGATACTTCTCAGTCAGATGATTTCCCATC  892

seq1  TAGCATCTAGCAGTTCTGAGGAACTCAAGGAAAGTGACACTAAGAAACCC  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGCATCTAGCAGTTCTGAGG-ACTCAAGGAAAGTGACACTAAGAAACCC  941

seq1  AAAAGGAAAAAGAAAGAGAAGAGTGACTATGTTCCCCTGCCTGACCCTGA  999
       |||||||||   ||||| ||||||||| |  | |||||| ||| |||||
seq2  -AAAGGAAAA--GAAGAG-AGAGTGACTTTTGTTCCCTGCTTGA-CCTGA  986

seq1  GGTACAGGAACTGGAAGGTGGCTATTGGTGCCAGGTCTGCTGAGATCTCA  1049
       ||||||||||||||  ||||||||  ||  |||   ||||| |||||||
seq2  -GTACAGGAACTGGA--GTGGCTAT--GTTGCAGTCTTGCTG-GATCTCA  1030

seq1  GAGGA-TGTCTAAGTGGGAGAG-CTGCAGTCCTGTTTCACACTG-ATTCT  1096
      ||||| ||||||   ||||||| ||||||| ||||||   |||| |||||
seq2  GAGGATTGTCTAGTGGGGAGAGCCTGCAGTTCTGTTTTCAACTGAATTCT  1080

seq1  TAAAGAGGGATGCAGGTGACTCCAGCATCACAGAGATCT  1135
      || || || || ||||||||||||||||  |||||||||
seq2  TAGAG-GGAATCCAGGTGACTCCAGCAT--CAGAGATCT  1116