BAC Information

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BAC

Clone NameB6Ng01-107P11
ChromosomeY (Build37)Y (Build37)
Map Location 1,120,708 - 1,120,959573,344 - 573,555
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107P11.bB6Ng01-107P11.g
ACCDH915278DH915279
length1,032433
definitionDH915278|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P11, 5' end.DH915279|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,708 - 1,120,959)(573,344 - 573,555)
sequence
gaattcccctgtattggggcatataaagtttgcatgtcctatgggcctct
ctttccagggatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagttctggcgttctgattagttcatattgttgttccacctatag
ggttgcagaccccttcagctcttgggtactttctctagctcctacattgg
gggccctgtgttccatccttagatgattgtgagcatccacttctgtattt
gccaggcactggcaaagcctcacagaagacagctatatcagggtcccttc
agcaaaatcttgctgacataaacaatagtgtctgcctttggtggctgatt
atgggatggacccctgggtggggcaatttctggatggtccatccttctct
attagctccaaactttgtctttgcaactccttccacaggtatttcattcc
ctattgtagggaggaatgaagtatccatgcgttgatcatccttcttcttg
attttcttgtgttttggaagttgaatcttgggtattgtaggtttctgggc
taatatccacttatcagtgagtacatatcatatgacttcttttgtgattg
ggttacctcactcaggatgatatcctccggatccatcaatttgcctaaaa
attttcataaactcattgtttttaatagctgagtagcactccattgtgta
aatgtaccacattttctgtatccattcctctgttaagggacatctgggtt
tttccagcttctggctattataaatagggctgttatgaacacagtggagc
atgtgtccttattgcaagttggaacaccttctgggtatatgccctggaga
catattgctggatctagtggtagtactatgtctagttttctgaggaaccg
ccagactgatttccagactggttgtacaagcttgcaatcccaccagcaat
ggaggactgttcctctttcacatctcgcagcatctgctgttcacctgaat
ttttgatcctagccattctgactgttgatttg
aaatctaagcagctcagaggggcagtgctctgtttctttcattaaagcta
tagtctctctagctcctccattggaggtcctgtgttccatccaatagatg
actgtgagcatccacttctgtatttgccaggcactggcatagcctcacaa
gagacagctatatcagggtcctttcggctaaatcttgctggcatatgcaa
tagtgtctgcgtttggtggctcaaggagctgaagggttctgcaaccctat
aggtggaacaacaatatgaactaaccagtaccctcagagctcgtgtctct
agctgcatatgtagcagaagatggcctagtcagccatcaatggtaggaga
ggcccttggtcttgcaaactttatatgtcccagtacaggggaacaccagg
accaagaagtgggagtgggtgggtaggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120708_1120959
seq2: B6Ng01-107P11.b_51_300

seq1  ATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  50
      ||||||||||| |||||||||||||||||||| |||| ||||||||||||
seq2  ATTCCCCTGTATTGGGGCATATAAAGTTTGCATGTCCTATGGGCCTCTCT  50

seq1  TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGT  100

seq1  CAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGG  150
      |||||| || || || ||| |||| |||||  ||||||||||||||||||
seq2  CAAGAGTTCTGGCGTTCTGATTAGTTCATATTGTTGTTCCACCTATAGGG  150

seq1  TTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGG  200
      ||| ||| ||||| |||| ||||| ||||||||||||||||| |||||||
seq2  TTGCAGACCCCTTCAGCT-CTTGGGTACTTTCTCTAGCTCCTACATTGGG  199

seq1  AGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTT  250
       ||||| || ||||||| |||| ||| ||||||||||||||||||| |||
seq2  GGCCCTGTGTTCCATCC-TTAGATGATTGTGAGCATCCACTTCTGTATTT  248

seq1  GC  252
      ||
seq2  GC  250

seq1: chrY_573344_573555
seq2: B6Ng01-107P11.g_296_507

seq1  CAAGGAGCTAAAGGGATCTGCAAACCTATAGATGGAACAACAATATGAA-  49
      ||||||||| ||||| ||||||| ||||||| ||||||||||||||||| 
seq2  CAAGGAGCTGAAGGGTTCTGCAACCCTATAGGTGGAACAACAATATGAAC  50

seq1  TAACCAGTATCCACAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGA  99
      ||||||||| || |||||||| |||||||||||||||||||| |||||||
seq2  TAACCAGTACCCTCAGAGCTCGTGTCTCTAGCTGCATATGTAGCAGAAGA  100

seq1  TGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACT  149
      |||||||||  ||||||| ||| | |||||| ||||||||||||||||||
seq2  TGGCCTAGTCAGCCATCAATGGTAGGAGAGG-CCCTTGGTCTTGCAAACT  149

seq1  TTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGT  199
      ||||||| |||||||||||||||||||||| ||||||||||||||  |||
seq2  TTATATGTCCCAGTACAGGGGAACACCAGGACCAAGAAGTGGGAGTGGGT  199

seq1  GGGTAGGGTAGCA  212
      |||||||| ||||
seq2  GGGTAGGGGAGCA  212