BAC Information

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BAC

Clone NameB6Ng01-108A08
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,840 - 1,120,988130,333,586 - 130,334,504
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A08.bB6Ng01-108A08.g
ACCDH915317DH915318
length496917
definitionDH915317|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A08, 5' end.DH915318|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,840 - 1,120,988)(130,333,586 - 130,334,504)
sequence
gaattctttgtttagctctgagccccattttttaatggggttattggatt
ttctggagtccaacttctttttttttaatgttttcttttttctgtatttt
ttattggatatttctttcaattacatttccagtgctatcccaaaagttcc
ctacacgctcccccacgaactcccctacccacccactcccacttcttggc
cctgccgttcccctgtactgaggcatataaattttgctcgaccaatgggc
ctccctttccactgatggacgaccaggccatcttctgattcataagcagc
tagaaacacgagcccaaggggggtggggtaattggttagttcatattgtt
gttccacctataggattgcagatcccttcagctccttgagtactttccct
agctcctccattgggggccctgtgatccatccaatagctgactgtgagca
tccacatctgtgtttgtcagtccccggcatagtctcacaagagaca
gaattcctgggaaagaagctgtttcagcaatgaaggatttaacacagaga
gaagtgaggactttgtagtgttgtgggtctcgggaataattatgttacca
gaggctaggaccctctaagtaacctgtgtcagaacaaacatcctgttacc
agtagataaaaacttcatgaaatatatgaacataacagaccactagcttc
gacaaaacagaagtctgagaatgtcctctgatgacctatagaaaagtttc
ccccatcttgctgcaactacctctctgatatatccaccaatgtatgctga
cattgtctggatttatgactttttaggttctttaaaactataaaactcca
tgaaacttctcccacattggaaaatggaggcatcgtcactctaaatggtt
ccagaatatagtatcttttattccataaaaggtgaaagctgatttttgca
tcaatagccctccattcaaagctcttgctgttcacattactagtgaggct
gcacatgctgaatacttcagacacttcattgggattgagggtgcagttta
gtgtagggacatgcttggcatatacaaagcattaatcacctatcatacaa
taatgataataaaaattataatacaaatgacaatgatataaggaaaaaca
atgacaataataatagaataaagagaggatgtaaaaattaaaactatttg
atttcaattgtctgttgccatgataatatattcaagtcactcactaatct
gtactttcatttgattgtagcttttcaaacctgctggcttgtttttgatg
aaacagtttaaattgttcttcaaattaagtgacagtggttaaaaagcact
gggaaatggtggatgatttgagactagaagaggaactcaagatgcctgac
tctaaatagattgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120840_1120988
seq2: B6Ng01-108A08.b_395_543

seq1  GTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTC  50
      ||||||||||||||||| ||| ||||||||| |||||||||  |||||||
seq2  GTTGTTCCACCTATAGGATTGCAGATCCCTTCAGCTCCTTGAGTACTTTC  50

seq1  TCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGA  100
       ||||||||||||||||| ||||| ||||||||||| |||||||||||||
seq2  CCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGA  100

seq1  GCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACA  149
      |||||||| ||||||||||   | |||||||||||||||||||||||||
seq2  GCATCCACATCTGTGTTTGTCAGTCCCCGGCATAGTCTCACAAGAGACA  149

seq1: chr6_130333586_130334504
seq2: B6Ng01-108A08.g_67_983

seq1  GAATTCCTGGGAAAGAAGCTGTTTCAGCAATGAAGGATTTAACACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAAAGAAGCTGTTTCAGCAATGAAGGATTTAACACAGAGA  50

seq1  GAAGTGAGGACTTTGTAGTGTTGTGGGTCTCGGGAATAATTATGTTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGACTTTGTAGTGTTGTGGGTCTCGGGAATAATTATGTTACCA  100

seq1  GAGGCTAGGACCCTCTAAGTAACCTGTGTCAGAACAAACATCCTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGGACCCTCTAAGTAACCTGTGTCAGAACAAACATCCTGTTACC  150

seq1  AGTAGATAAAAACTTCATGAAATATATGAACATAACAGACCACTAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAAAAACTTCATGAAATATATGAACATAACAGACCACTAGCTTC  200

seq1  GACAAAACAGAAGTCTGAGAATGTCCTCTGATGACCTATAGAAAAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACAGAAGTCTGAGAATGTCCTCTGATGACCTATAGAAAAGTTTC  250

seq1  CCCCATCTTGCTGCAACTACCTCTCTGATATATCCACCAATGTATGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTTGCTGCAACTACCTCTCTGATATATCCACCAATGTATGCTGA  300

seq1  CATTGTCTGGATTTATGACTTTTTAGGTTCTTTAAAACTATAAAACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGGATTTATGACTTTTTAGGTTCTTTAAAACTATAAAACTCCA  350

seq1  TGAAACTTCTCCCACATTGGAAAATGGAGGCATCGTCACTCTAAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCTCCCACATTGGAAAATGGAGGCATCGTCACTCTAAATGGTT  400

seq1  CCAGAATATAGTATCTTTTATTCCATAAAAGGTGAAAGCTGATTTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATATAGTATCTTTTATTCCATAAAAGGTGAAAGCTGATTTTTGCA  450

seq1  TCAATAGCCCTCCATTCAAAGCTCTTGCTGTTCACATTACTAGTGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGCCCTCCATTCAAAGCTCTTGCTGTTCACATTACTAGTGAGGCT  500

seq1  GCACATGCTGAATACTTCAGACACTTCATTGGGATTGAGGGTGCAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTGAATACTTCAGACACTTCATTGGGATTGAGGGTGCAGTTTA  550

seq1  GTGTAGGGACATGCTTGGCATATACAAAGCATTAATCACCTATCATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGGACATGCTTGGCATATACAAAGCATTAATCACCTATCATACAA  600

seq1  TAATGATAATAAAAATTATAATACAAATGACAATGATATAAGGAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAATAAAAATTATAATACAAATGACAATGATATAAGGAAAAACA  650

seq1  ATGACAATAATAATAGAATAAAGAGAGGATGTAAAAATTAAAACTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATAATAATAGAATAAAGAGAGGATGTAAAAATTAAAACTATTTG  700

seq1  ATTTCAATTGTCTGTTGCCATGATAAATATATTCAAGTCACTCACTAATC  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTTCAATTGTCTGTTGCCATGAT-AATATATTCAAGTCACTCACTAATC  749

seq1  TGTACTTTCATTTGATTGTAGCTTTTCAAACCTGCTGGCTTGTTTTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTCATTTGATTGTAGCTTTTCAAACCTGCTGGCTTGTTTTTGAT  799

seq1  GAAACAGTTTAAATTGTTCTTCAAATTAAGTGACAGTGGTTAAAAAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAACAGTTTAAATTGTTCTTCAAATTAAGTGACAGTGGTT-AAAAAGCA  848

seq1  CTGGGAAATGGTGGATGATTTGAGACTAGAAGAGGAACTCAAGATGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAATGGTGGATGATTTGAGACTAGAAGAGGAACTCAAGATGCCTG  898

seq1  ACTCCTAATAGATTGTGTG  919
      ||||  |||||||||||||
seq2  ACTCTAAATAGATTGTGTG  917