BAC Information

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BAC

Clone NameB6Ng01-108N17
ChromosomeY (Build37)14 (Build37)
Map Location 573,321 - 573,5247,528,304 - 7,529,433
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N17.bB6Ng01-108N17.g
ACCDH915931DH915932
length4941,120
definitionDH915931|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N17, 5' end.DH915932|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,524)(7,528,304 - 7,529,433)
sequence
acatgatatgtacccactaataagtggatattagcccagaaatttagaaa
acccaaggtatgagatacaatatgcaaaacacaagaaactcaagaataac
taagaccaaagtgtggacactttgcacctttttataattgggaacaaaac
acccatggaaggagttacagagacaaaatttggagctgagaagaaaggat
gtaccatctagaaactgccatagaagtggttgctcacagtcagctattgg
atggatcacagggcccccaatggaggagctagagaaagtacccaaggagc
taaagggatctgaaaccctctaggtggaacaacaatatgaactaaccagt
accctctcccccttcacccctcctccggagatcatgtctcaatctgcata
tgtatcagaagataccctagttggccatcagtggaaagagaggcaccttg
ttcttgcaaactttatatgcctcagtacaggggaacacgagggc
gaattcaggtgtgagtcctgaactgttctagcacactggatgtcaaacac
tggctcttacccactggaacttcctgttgtttattaaacttattctcatg
atccaaaacagcagagaaaaggaaaccagaggtagggagccagagatgaa
tgagaaccctcaatgggcctggaggagtaaactaactctctaaaaatttt
ccaggggatataggctcacatgaaacccgcggtgacatttgtgttttctt
cagaacaaggatttttgatcctgggttcctgttactccatggaagcccag
agcacacaatcagtattttcaaggaggaaatccaacataaagatgtctgg
attacggtttacaaggaattctgatatatctccaaggtgaacacataggg
ccataggccaagagcagcgagggtcaaagtggggctccctggtctcagca
ctggcactgcttggaacttgtaaaaggaaaatcatcctggtgaccagaag
cctaattaccaaaatccagagggaaacatgcaaaaaaatgaaggaaattg
gcactgtcccagagtctaaggcagtagacaagaaaggagcaatggtaaaa
tctgttcacaaacttcgacagaccaagtggcaccagatcacttctgctgt
agtctgagcaatcagcaccaatgctcatgatgattaagtacaaagactca
ccataaactcacaatacctagcatatgacagaagctaacacctgtcaaga
cctcttgaaatgtgtgctgtgagatcacactctagtacccttatcccctg
actccatgcgacaggctctgctttttatttggaggaaggggatcagaata
cttcccacacagtacatatacctactaaccaggcatcagttctgtctctt
agaagaatatataaaaattagtctggggatgagaatatgattgagcacaa
tcctcatgtgatctgacaaatactggggatgatgtatggtgtcaaacaga
aaacagaactgggcgtaatgcttacacgtcttcaattacctgttgctata
tgatccagaattgcatgcagttcatcctctcattgtcataatctgaagtg
aattgcagttatctgcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573524
seq2: B6Ng01-108N17.b_321_545

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGAAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCC---------------  84
       ||| ||||||||||||||||| ||||||||| ||               
seq2  CTAGGTGGAACAACAATATGAACTAACCAGTACCCTCTCCCCCTTCACCC  100

seq1  -----ACAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTA  129
            | ||| ||||||||| | ||||||||||||||||||||  ||||
seq2  CTCCTCCGGAGATCATGTCTCAATCTGCATATGTATCAGAAGATACCCTA  150

seq1  GTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATG  179
      ||||||||||| ||| ||||||||| ||||| ||||||||||||||||||
seq2  GTTGGCCATCAGTGGAAAGAGAGGCACCTTGTTCTTGCAAACTTTATATG  200

seq1  CCCCAGTACAGGGGAACACCAGGGC  204
      || |||||||||||||||| |||||
seq2  CCTCAGTACAGGGGAACACGAGGGC  225

seq1: chr14_7528304_7529433
seq2: B6Ng01-108N17.g_71_1190

seq1  GAATTCAGGTGTGAGTCCTGAACTGTTCTAGCACACTGGATGTCAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTGAGTCCTGAACTGTTCTAGCACACTGGATGTCAAACAC  50

seq1  TGGCTCTTACCCACTGGAACTTCCTGTTGTTTATTAAACTTATTCTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTACCCACTGGAACTTCCTGTTGTTTATTAAACTTATTCTCATG  100

seq1  ATCCAAAACAGCAGAGAAAAGGAAACCAGAGGTAGGGAGCCAGAGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACAGCAGAGAAAAGGAAACCAGAGGTAGGGAGCCAGAGATGAA  150

seq1  TGAGAACCCTCAATGGGCCTGGAGGAGTAAACTAACTCTCTAAAAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCCTCAATGGGCCTGGAGGAGTAAACTAACTCTCTAAAAATTTT  200

seq1  CCAGGGGATATAGGCTCACATGAAACCCGCGGTGACATTTGTGTTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATATAGGCTCACATGAAACCCGCGGTGACATTTGTGTTTTCTT  250

seq1  CAGAACAAGGATTTTTGATCCTGGGTTCCTGTTACTCCATGGAAGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAGGATTTTTGATCCTGGGTTCCTGTTACTCCATGGAAGCCCAG  300

seq1  AGCACACAATCAGTATTTTCAAGGAGGAAATCCAACATAAAGATGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAATCAGTATTTTCAAGGAGGAAATCCAACATAAAGATGTCTGG  350

seq1  ATTACGGTTTACAAGGAATTCTGATATATCTCCAAGGTGAACACATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGGTTTACAAGGAATTCTGATATATCTCCAAGGTGAACACATAGGG  400

seq1  CCATAGGCCAAGAGCAGCGAGGGTCAAAGTGGGGCTCCCTGGTCTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGCCAAGAGCAGCGAGGGTCAAAGTGGGGCTCCCTGGTCTCAGCA  450

seq1  CTGGCACTGCTTGGAACTTGTAAAAGGAAAATCATCCTGGTGACCAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTGCTTGGAACTTGTAAAAGGAAAATCATCCTGGTGACCAGAAG  500

seq1  CCTAATTACCAAAATCCAGAGGGAAACATGCAAAAAAATGAAGGAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTACCAAAATCCAGAGGGAAACATGCAAAAAAATGAAGGAAATTG  550

seq1  GCACTGTCCCAGAGTCTAAGGCAGTAGACAAGAAAGGAGCAATGGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCCCAGAGTCTAAGGCAGTAGACAAGAAAGGAGCAATGGTAAAA  600

seq1  TCTGTTCACAAACTTCGACAGACCAAGTGGCACCAGATCACTTCTGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCACAAACTTCGACAGACCAAGTGGCACCAGATCACTTCTGCTGT  650

seq1  AGTCTGAGCAATCAGCACCAATGCTCATGATGATTAAGTACAAAGACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGCAATCAGCACCAATGCTCATGATGATTAAGTACAAAGACTCA  700

seq1  CCATAAACTCACAATACCTAGCATATGACAGAAGCTAACACCTGTCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACTCACAATACCTAGCATATGACAGAAGCTAACACCTGTCAAGA  750

seq1  CCTCTTGAAATGTGTGCTGTGAGATCACACTCTAGTACCCTTATCCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAAATGTGTGCTGTGAGATCACACTCTAGTACCCTTATCCCCTG  800

seq1  ACTCCATGCGACAGGCTCTGCTTTTTATTTGGAGGAAGGGGATCAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGCGACAGGCTCTGCTTTTTATTTGGAGGAAGGGGATCAGAATA  850

seq1  CTTCCCACACAGTACATATACCTACTAACCAGGCATCAGTTCTGTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACACAGTACATATACCTACTAACCAGGCATCAGTTCTGTCTCTT  900

seq1  AGAAGAATATATAAAAATTAGTCTGGGGATGAGAATATGATTGAGGCACA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAGAATATATAAAAATTAGTCTGGGGATGAGAATATGATTGA-GCACA  949

seq1  A-CCTCATGTGATCTGACAAATACTGGGGATGATGTTATGGTGTCAAAAC  999
      | ||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  ATCCTCATGTGATCTGACAAATACTGGGGATGATG-TATGGTGTC-AAAC  997

seq1  AGAAAACAGAACTGGGCGTAATGCTTACACGTTCTTCAAATAACTGTTGC  1049
      ||||||||||||||||||||||||||||||| ||||||| || |||||||
seq2  AGAAAACAGAACTGGGCGTAATGCTTACACG-TCTTCAATTACCTGTTGC  1046

seq1  TATAATGATCCAGAATTGCATGCAGTTCATTCCTCTCATAGGTCATAATC  1099
      ||| ||||||||||||||||||||||||| |||||||||  |||||||||
seq2  TAT-ATGATCCAGAATTGCATGCAGTTCA-TCCTCTCAT-TGTCATAATC  1093

seq1  TGAGGGTGAAATGGCAGTTTATCTGCCTTGT  1130
      |||  ||| ||| |||| ||||||| |||||
seq2  TGA-AGTG-AATTGCAG-TTATCTG-CTTGT  1120