BAC Information

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BAC

Clone NameB6Ng01-111C02
ChromosomeY (Build37)
Map Location 2,083,845 - 2,085,010
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181
Downstream geneRbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C02.bB6Ng01-111C02.g
ACCDH917561DH917562
length1,1431,233
definitionDH917561|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C02, 5' end.DH917562|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagcattgcacatagcaaatattctacgcccaatttagatgac
cagtctctttgaattttttaattgctaatttttaattgcaatttttaatt
gctaattgctaattgtcttgctagtcctaggaaaggactggccttgctag
ggaggacttgaatttggggtcttcctgcctcagcctcctcaatagctttc
tgtattacaactgtattattaagattagtttgtatttttttgtgttctgg
tgttttgcctgtatgtatgtgtatcagtgcaccacttgagtgcagtgcac
agggagacagtggtaagtaagtatgtgaatagtaggaattaaatccaggt
cctctgcaagaggaactagtattcttacctgctgatcgatctcttcagcc
ccacaatttcactgtataaaaatgataactgtataaaatatgtttacctt
ttagtcatagatcatctgcggtgttattttacctgacagaaaagttttga
aagtttaaatgaagatgcaattgacaataaaacattagtatagtgtatgt
agaatttgcaagcaataaacggtaagaataaaaagagtatattaattggc
aaaaaatatctttaagatctgtggaaacttctaatctgtcagtaaaatcc
ttataatacaagtacaaaaatttgtatgatgccctataccaatctttagc
tgatgtgcttatgagtacaattcagaagagattgcgggttaatccttgaa
acgtgatggccagtttgccagggttagttgccatgccacaggttccagtg
agagactctgtctcaaaaaacacagtagacatctcctagggaatgatacc
agagttttacttctggtccccatacttatgtacacaccagtgtacatata
tgctcctttataaactgaacgtcatatacgaatattatgcataacatgat
gtccataaatacaagatattaactactgaaaatggtagttaggtactaaa
atacattagttcttgacatacaggacactcaaaaaagctccacaatcaca
aaatgtagaaaaaaatacaagcaaagacttagacaaaatctcagaaaaca
ttccaaaccaaagtctgcaaattctgtagctcatttggttggc
ggcaaacggttgtaaaagccgctctccctagtatgggcaaatatatggaa
tggagagcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgc
agctgctttgactccagagcagagagattggacttttgacttgttaacgg
gtcagggagcttattctgctgatcaaacaaactaccattggggagcttat
gcccagatttcttccacggctattagggcctggaaggcgctctctcgagc
aggtgaaaccactggtcagttaacaaagataatccagggacctcaggaat
ccttctcagattttgtggccagaatgacagaggcagcagagcgtattttt
ggagagtcagagcaagctgcgcctctgatagaacagctaatctatgagca
agccacaaaggagtgccgagcggccatagccccaagaaagaacaaaggct
tacaagactggctcagggtctgtcgagagcttgggggacctctcagcaat
gcaggtttagcggctgccatccttcaatctcagaaccgctccatgggcag
aaataatcagaggacatgttttaactgcggaaagcctgggcattttaaga
aagattgcagagctccagataaacagggagggactctcactctttgctct
aagtgtggcaagggttatcatagagctgaccagtgtcgctctgtgaggga
tataaagggcagagtccttcccccacctgatagtcaatcaactgatgtgc
caaaaaacgggtcatcgggccctcggtcccagggccctcaaagatatggg
aaccggtttgtcaggacccaggaagcagtcagagaggcgacccaggaaga
cccacaaggtggacctgcgtgccgcctccgacttcctattaatgcctcaa
atgagtattcagccggtgccgtggagctataccatccttgcccccgggga
accatgggccttattctcggcggggttcactcaccttgcaggcttagtag
tccaccctgagttatggattgtcacattcccctgaaatacagtctgtgct
caggcctaaaggcgtttttctatagtaggagataggatagctcagctgct
gctctctgataatacaggagaaattgcaggactgaataagaaatggctcc
tagaaatgattctgcattggtgtatatctaagttagacctaggctcgcct
tagatcattcgaaaagaagttgtgagagcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2083845_2085010
seq2: B6Ng01-111C02.b_47_1189

seq1  GAATTCAAAGCATTGCACATAGCAAATATTCTACGCCCAATTTAGATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCATTGCACATAGCAAATATTCTACGCCCAATTTAGATGAC  50

seq1  CAGTCTCTTTGAATTTTTTAATTGCTAATTTTTAATTGCAATTTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTTTGAATTTTTTAATTGCTAATTTTTAATTGCAATTTTTAATT  100

seq1  GCTAATTGCTAATTGTCTTGCTAGTCCTAGGAAAGGACTGGCCTTGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGCTAATTGTCTTGCTAGTCCTAGGAAAGGACTGGCCTTGCTAG  150

seq1  GGAGGACTTGAATTTGGGGTCTTCCTGCCTCAGCCTCCTCAATAGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACTTGAATTTGGGGTCTTCCTGCCTCAGCCTCCTCAATAGCTTTC  200

seq1  TGTATTACAACTGTATTATTAAGATTAGTTTGTATTTTTTTGTGTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACAACTGTATTATTAAGATTAGTTTGTATTTTTTTGTGTTCTGG  250

seq1  TGTTTTGCCTGTATGTATGTGTATCAGTGCACCACTTGAGTGCAGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTGTATGTATGTGTATCAGTGCACCACTTGAGTGCAGTGCAC  300

seq1  AGGGAGACAGTGGTAAGTAAGTATGTGAATAGTAGGAATTAAATCCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGTGGTAAGTAAGTATGTGAATAGTAGGAATTAAATCCAGGT  350

seq1  CCTCTGCAAGAGGAACTAGTATTCTTACCTGCTGATCGATCTCTTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAGAGGAACTAGTATTCTTACCTGCTGATCGATCTCTTCAGCC  400

seq1  CCACAATTTCACTGTATAAAAATGATAACTGTATAAAATATGTTTACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTTCACTGTATAAAAATGATAACTGTATAAAATATGTTTACCTT  450

seq1  TTAGTCATAGATCATCTGCGGTGTTATTTTACCTGACAGAAAAGTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATAGATCATCTGCGGTGTTATTTTACCTGACAGAAAAGTTTTGA  500

seq1  AAGTTTAAATGAAGATGCAATTGACAATAAAACATTAGTATAGTGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAATGAAGATGCAATTGACAATAAAACATTAGTATAGTGTATGT  550

seq1  AGAATTTGCAAGCAATAAACGGTAAGAATAAAAAGAGTATATTAATTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGCAAGCAATAAACGGTAAGAATAAAAAGAGTATATTAATTGGC  600

seq1  AAAAAATATCTTTAAGATCTGTGGAAACTTCTAATCTGTCAGTAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATCTTTAAGATCTGTGGAAACTTCTAATCTGTCAGTAAAATCC  650

seq1  TTATAATACAAGTACAAAAATTTGTATGATGCCCTATACCAATCTTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATACAAGTACAAAAATTTGTATGATGCCCTATACCAATCTTTAGC  700

seq1  TGATGTGCTTATGAGTACAATTCAGAAGAGATTGCGGGTTAATCCTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCTTATGAGTACAATTCAGAAGAGATTGCGGGTTAATCCTTGAA  750

seq1  ACGTGATGGCCAGTTTGCCAGGGTTAGTTGCCATGCCACAGGTTCCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATGGCCAGTTTGCCAGGGTTAGTTGCCATGCCACAGGTTCCAGTG  800

seq1  AGAGACTCTGTCTCAAAAAACACAGTAGACATCTCCTAGGGAATGATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTGTCTCAAAAAACACAGTAGACATCTCCTAGGGAATGATACC  850

seq1  AGAGTTTTACTTCTGGTCCCCATACTTATGTACACACCAGTGTACATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTACTTCTGGTCCCCATACTTATGTACACACCAGTGTACATATA  900

seq1  TGCTCCTTTATAAACTGAACGTCAATATACGAATATTATGCATAACATGA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTCCTTTATAAACTGAACGTC-ATATACGAATATTATGCATAACATGA  949

seq1  TGTCCATAAATAACAAGATATTAACTACTGAAAAATGGTAGTTAGGTACT  1000
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  TGTCCATAAAT-ACAAGATATTAACTACTG-AAAATGGTAGTTAGGTACT  997

seq1  AAAATACAATTAAGTTTCTTGACATACAGGACACTCAAAAAAAGCTCCAC  1050
      ||||||| ||||   ||||||||||||||||||||| |||||||||||||
seq2  AAAATAC-ATTA--GTTCTTGACATACAGGACACTC-AAAAAAGCTCCAC  1043

seq1  AAATCACAAAAAAGGTAGAAAAAAATACAAGCAAAAGACATTAAGACAAA  1100
       ||||||  |||| |||||||||||||||||| ||||||  | |||||||
seq2  -AATCAC--AAAATGTAGAAAAAAATACAAGC-AAAGAC--TTAGACAAA  1087

seq1  AATCTTCAAAGAAAACAATACAAAACAAAAAGTCTGCAAAAATTCTGTAG  1150
      |    ||  |||||||| | |||| |  |||||||||  |||||||||||
seq2  A----TCTCAGAAAACATTCCAAACC--AAAGTCTGC--AAATTCTGTAG  1129

seq1  CTCATTTTGTGTTGGC  1166
      |||||||   ||||||
seq2  CTCATTT--GGTTGGC  1143