BAC Information

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BAC

Clone NameB6Ng01-112F09
ChromosomeY (Build37)15 (Build37)
Map Location 1,870,346 - 1,870,50510,881,374 - 10,882,524
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112F09.bB6Ng01-112F09.g
ACCDH918427DH918428
length4941,143
definitionDH918427|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F09, 5' end.DH918428|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,505)(10,881,374 - 10,882,524)
sequence
tttgttcagctctgagccccattttttaatggggttatttgattttctgg
aattcaccttcttgagttttttatataaaacacccatggaaggagttaca
gagacaaaatttggagctgtgatgaaaggatggaccatctagtgactgcc
atatgcagggatccatcccataatcagcttccaaatgctgacaccattgc
atacactagcaagattttgctgaaaggacccagatatagctctctcttgt
gagactatgccggggcctagcaaacacagaagtggatgatcacagtcagc
tattggatgggtcacacggcccccaatggaggagctagagaaattaccca
aggagctaaagggaactgcaaccctataggtggaacaacaatatgaacta
accagtacccgggagctcttgtctttagctgcatatgtatgaaaagatgg
cctagtcggccatcactgcaaagagaggcccattggacttgcaa
gaattctgagtacctggccccagaatgggttgatctgggctaggtcctct
acctcagggtgcggaagcgcctctggtctcaggggttttaggtctgtaga
agtgttattatccacagtcccagttttagcttggctctgctctctcactt
tctccctcctggagccgctacggccagtctgctggtggctctgcactatc
ctggccaccgctttattagctcttctgctcacctccatgtattcatcttg
acacaggcaaaatgggaggaaaagcaaaggcagcaggtgccaccagatgc
gctgcctcccgagcatggctcggcaaatcggcaaatcgacaagagtctcg
cagggaagcttgacaggggctggaggtaccgtggtcgcctcaggcaaatg
ccaggtttggagatgagagctgcagccggctgtgtggttttatactcttt
ggtgtgtaataaataaggctgcagtcatgccagagtgacagcggctctcc
tcccagacagagcagctctcattcatcacattcctgcaccgcaggcaaga
cagtctgtgtgcacggcgtccagttggtggggttcataaatgtctcacct
tggcatgttattttgtgtaagagtggagaaaatgtacacagccggctgga
aacagagtgtgtgtgtccagtggcttgccttcgtgattagacgtggaaag
gctgtgcctttgtggtctaaaacgactcttggaaaaacctaccattgagc
ttgccagggaatgcggctcagactgtatcagttcctgcaatcacagcagg
atcccattcaaggccatggagggaggtcttgcttttgcacggtgcagatc
acaattttgcactttgggtcactgcaagcaactcattctcccttccagat
accagcagcagcctacagatggtgactgggaaagactgacctgagttcaa
gggtaaagctgactttgaccagatagttccccatgctagctcatattctc
ctttgcgtcctctacgaggcacatagaaccagatgttttcttgcaactaa
gttcctgctagatggaaatacacctacttccttgttaaagagactcccct
ggctgcttctacccatggatgttgctgcccaaacgagaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870505
seq2: B6Ng01-112F09.b_390_549

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||  ||||||||| || | |||||||
seq2  ACAACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTATGAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGCAA  160
      |||| |||||
seq2  GGACTTGCAA  160

seq1: chr15_10881374_10882524
seq2: B6Ng01-112F09.g_68_1210 (reverse)

seq1  TCTC-TCTCGTTTTGGGCAGCAACAATCCATGGGTAGAGAGCAGCCAGAG  49
      |||| ||||| ||||||||||||| ||||||||||||| ||||||||| |
seq2  TCTCTTCTCG-TTTGGGCAGCAAC-ATCCATGGGTAGA-AGCAGCCAGGG  47

seq1  GAGTCTC-TTAACAAGAAAGTAGGTTGTATTTCCATCTAGCAAGAACTTA  98
      ||||||| |||||||| ||||||| ||||||||||||||||| |||||||
seq2  GAGTCTCTTTAACAAGGAAGTAGG-TGTATTTCCATCTAGCAGGAACTTA  96

seq1  GATGCAAG-AAACATCTGGTTTCTAATGTTGGCTCGTAGA-GACGCAAAG  146
      | |||||| |||||||||| |||| ||| || |||||||| |||||||||
seq2  GTTGCAAGAAAACATCTGG-TTCT-ATG-TGCCTCGTAGAGGACGCAAAG  143

seq1  GAGAATATGGAGCTTAGCATGGGGGAACTATCTTGGTCAAAGTCAGCCTT  196
      |||||||| |||| |||||| ||||||||||| ||||||||||||| |||
seq2  GAGAATAT-GAGC-TAGCAT-GGGGAACTATC-TGGTCAAAGTCAG-CTT  188

seq1  TACCCTTGAACTCAGGTCAGTCTTTCCCAGTCACCATCTGTAGGCTGCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTGAACTCAGGTCAGTCTTTCCCAGTCACCATCTGTAGGCTGCTG  238

seq1  CTGGTATCTGGAAGGGAGAATGAGTTGCTTGCAGTGACCCAAAGTGCAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCTGGAAGGGAGAATGAGTTGCTTGCAGTGACCCAAAGTGCAAA  288

seq1  ATTGTGATCTGCACCGTGCAAAAGCAAGACCTCCCTCCATGGCCTTGAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATCTGCACCGTGCAAAAGCAAGACCTCCCTCCATGGCCTTGAAT  338

seq1  GGGATCCTGCTGTGATTGCAGGAACTGATACAGTCTGAGCCGCATTCCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCTGCTGTGATTGCAGGAACTGATACAGTCTGAGCCGCATTCCCT  388

seq1  GGCAAGCTCAATGGTAGGTTTTTCCAAGAGTCGTTTTAGACCACAAAGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTCAATGGTAGGTTTTTCCAAGAGTCGTTTTAGACCACAAAGGC  438

seq1  ACAGCCTTTCCACGTCTAATCACGAAGGCAAGCCACTGGACACACACACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTCCACGTCTAATCACGAAGGCAAGCCACTGGACACACACACT  488

seq1  CTGTTTCCAGCCGGCTGTGTACATTTTCTCCACTCTTACACAAAATAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCAGCCGGCTGTGTACATTTTCTCCACTCTTACACAAAATAACA  538

seq1  TGCCAAGGTGAGACATTTATGAACCCCACCAACTGGACGCCGTGCACACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGTGAGACATTTATGAACCCCACCAACTGGACGCCGTGCACACA  588

seq1  GACTGTCTTGCCTGCGGTGCAGGAATGTGATGAATGAGAGCTGCTCTGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTTGCCTGCGGTGCAGGAATGTGATGAATGAGAGCTGCTCTGTC  638

seq1  TGGGAGGAGAGCCGCTGTCACTCTGGCATGACTGCAGCCTTATTTATTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGAGCCGCTGTCACTCTGGCATGACTGCAGCCTTATTTATTAC  688

seq1  ACACCAAAGAGTATAAAACCACACAGCCGGCTGCAGCTCTCATCTCCAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAGAGTATAAAACCACACAGCCGGCTGCAGCTCTCATCTCCAAA  738

seq1  CCTGGCATTTGCCTGAGGCGACCACGGTACCTCCAGCCCCTGTCAAGCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATTTGCCTGAGGCGACCACGGTACCTCCAGCCCCTGTCAAGCTT  788

seq1  CCCTGCGAGACTCTTGTCGATTTGCCGATTTGCCGAGCCATGCTCGGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCGAGACTCTTGTCGATTTGCCGATTTGCCGAGCCATGCTCGGGAG  838

seq1  GCAGCGCATCTGGTGGCACCTGCTGCCTTTGCTTTTCCTCCCATTTTGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGCATCTGGTGGCACCTGCTGCCTTTGCTTTTCCTCCCATTTTGCC  888

seq1  TGTGTCAAGATGAATACATGGAGGTGAGCAGAAGAGCTAATAAAGCGGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAAGATGAATACATGGAGGTGAGCAGAAGAGCTAATAAAGCGGTG  938

seq1  GCCAGGATAGTGCAGAGCCACCAGCAGACTGGCCGTAGCGGCTCCAGGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATAGTGCAGAGCCACCAGCAGACTGGCCGTAGCGGCTCCAGGAG  988

seq1  GGAGAAAGTGAGAGAGCAGAGCCAAGCTAAAACTGGGACTGTGGATAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGTGAGAGAGCAGAGCCAAGCTAAAACTGGGACTGTGGATAATA  1038

seq1  ACACTTCTACAGACCTAAAACCCCTGAGACCAGAGGCGCTTCCGCACCCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTACAGACCTAAAACCCCTGAGACCAGAGGCGCTTCCGCACCCT  1088

seq1  GAGGTAGAGGACCTAGCCCAGATCAACCCATTCTGGGGCCAGGTACTCAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAGGACCTAGCCCAGATCAACCCATTCTGGGGCCAGGTACTCAG  1138

seq1  AATTC  1151
      |||||
seq2  AATTC  1143