BAC Information

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BAC

Clone NameB6Ng01-112G05
Chromosome7 (Build37)Y (Build37)
Map Location 71,663,987 - 71,664,9441,870,474 - 1,870,572
singlet/doubletsingletsinglet
Overlap geneApba2
Upstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Downstream gene5730507A09Rik, Ndnl2, Tjp1, Gm1693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G05.bB6Ng01-112G05.g
ACCDH918467DH918468
length962369
definitionDH918467|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G05, 5' end.DH918468|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,663,987 - 71,664,944)(1,870,474 - 1,870,572)
sequence
gaattccaggacagtcagggatacacagagaaaccctgtctcgaaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
ggcaagcaagcaagccctgggcacccagggtctccatgctagcagctttc
aatccccataaggaaagccctgggagaactaaattctgtccatagttcta
caggctgcactccatacatagatgctccattgctttgggcctcgggtgga
ttaccagggggcgctccagagcacactactcacctcatagccaagaagac
aaagatagaaggggccacacatctcatactcccctttagaggaacaccct
gcctccagcgacataagggactcccattcaggcccctcttctgaaaaagt
cctccacattattacctcccaacggcagaccactgggatgagcctttaac
acatgcgcctttaaggcacatttatccaaactaccctagtccacagtaga
gtgggtcttctgccttctaaggggcatgtttccttttctagcctattgcc
tgcttcccctgccccatgcaacacagcaccacataccaagtcacatgtcc
ttcagcattcctatgatcttgcaaagggtgttactggtgttgcaggtggg
aggagctgatgatggacaagcactgctacctacccaggctgcggggacag
cttgggtccctggcacgcccaggtgaacttccactgaacagaggcaactt
tgagactgcacgcacgtctgagcctgtttaatgcttcttctcccttcact
tcttctatgcatcagctagacagtaaaagtgacagttaggaagtgaagac
ctgatctacttctgcagccaagtttagccccggctcatatcaagcagctg
cttcgtgggacc
tttgccagcattccaacatcccagaaaatccttgaagccgacaaacttgg
aattcagtaagaatgttacctattcagtaatgttcaaatttacttctagt
agagacggtgaaactaattaggcattacaaagaacggagctagaatagct
caggactagtctgcagagtgattacttaggacagtagccagtctcaccca
aacaagggaatacacaatgattagttcataatgttgaactaatcattgtg
tattcccttcactggaaagagaggcccattggacacgcaaactttatatg
ccccagtacaggggaacgccagggccaaaaagggggagtgggtgggtagg
ggagtggaatgggcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71663987_71664944
seq2: B6Ng01-112G05.b_50_986 (reverse)

seq1  TGAGCCCGGCGGCTAAAACCTTGGGCTGCAGAAGTTAGGTTCAGGTTCTT  50
      ||||||  | |||||||  ||| ||||||||||||   | ||||||   |
seq2  TGAGCC--GGGGCTAAA--CTT-GGCTGCAGAAGT--AGATCAGGT--CT  41

seq1  TCACTTTCCTAACTGTCACCTTCTACGTGTTTAGCTGAGGCATAGGAAGA  100
      |||| ||||||||||||| ||| ||| ||| ||||||| ||||| |||||
seq2  TCAC-TTCCTAACTGTCA-CTTTTAC-TGTCTAGCTGATGCATA-GAAGA  87

seq1  AGTGGAAGGGAGAAGAAGCCTTTAAACAGGCTCAGACCTGCTGTGCAGTC  150
      ||| |||||||||||||| | |||||||||||||||| ||| ||||||||
seq2  AGT-GAAGGGAGAAGAAG-CATTAAACAGGCTCAGACGTGC-GTGCAGTC  134

seq1  TCAAAGTTGGCTCTGGTTCAGTGGAAGTTCACCTGGGCCTGCCAGGGACC  200
      ||||||||| |||| ||||||||||||||||||||||| |||||||||||
seq2  TCAAAGTTGCCTCT-GTTCAGTGGAAGTTCACCTGGGCGTGCCAGGGACC  183

seq1  CAAGCTGTCCCCGCAGCCTGGGTAGGTAGCAGTGCTTGTCCATCATCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTCCCCGCAGCCTGGGTAGGTAGCAGTGCTTGTCCATCATCAGC  233

seq1  TCCTCCCACCTGCAACACCAGTAACACCCTTTGCAAGATCATAGGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCACCTGCAACACCAGTAACACCCTTTGCAAGATCATAGGAATGC  283

seq1  TGAAGGACATGGGACTTGGTATGTGGTGCTGTGTTGCATGGGGCAGGGGA  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACATGTGACTTGGTATGTGGTGCTGTGTTGCATGGGGCAGGGGA  333

seq1  AGCAGGCAATAGGCTAGAAAAGGAAACATGCCCCTTAGAAGGCAGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAATAGGCTAGAAAAGGAAACATGCCCCTTAGAAGGCAGAAGAC  383

seq1  CCACTCTACTGTGGACTAGGGTAGTTTGGATAAATGTGCCTTAAAGGCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTACTGTGGACTAGGGTAGTTTGGATAAATGTGCCTTAAAGGCGC  433

seq1  ATGTGTTAAAGGCTCATCCCAGTGGTCTGCCGTTGGGAGGTAATAATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTAAAGGCTCATCCCAGTGGTCTGCCGTTGGGAGGTAATAATGTG  483

seq1  GAGGACTTTTTCAGAAGAGGGGCCTGAATGGGAGTCCCTTATGTCGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTTTTCAGAAGAGGGGCCTGAATGGGAGTCCCTTATGTCGCTGG  533

seq1  AGGCAGGGTGTTCCTCTAAAGGGGAGTATGAGATGTGTGGCCCCTTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGTGTTCCTCTAAAGGGGAGTATGAGATGTGTGGCCCCTTCTAT  583

seq1  CTTTGTCTTCTTGGCTATGAGGTGAGTAGTGTGCTCTGGAGCGCCCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTCTTGGCTATGAGGTGAGTAGTGTGCTCTGGAGCGCCCCCTG  633

seq1  GTAATCCACCCGAGGCCCAAAGCAATGGAGCATCTATGTATGGAGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCACCCGAGGCCCAAAGCAATGGAGCATCTATGTATGGAGTGCAG  683

seq1  CCTGTAGAACTATGGACAGAATTTAGTTCTCCCAGGGCTTTCCTTATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAACTATGGACAGAATTTAGTTCTCCCAGGGCTTTCCTTATGGG  733

seq1  GACTGAAAGCTGCTAGCATGGAGACCCTGGGTGCCCAGGGCTTGCTTGCT  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAGCTGCTAGCATGGAGACCCTGGGTGCCCAGGGCTTGCTTGCT  783

seq1  TGCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  850
      ||||    ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCC----TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  829

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  879

seq1  TTCTTTCTTTCTTTTCGAGACAGGGTTTCTCTGTGTATCCCTGACTGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTTCGAGACAGGGTTTCTCTGTGTATCCCTGACTGTCC  929

seq1  TGGAATTC  958
      ||||||||
seq2  TGGAATTC  937

seq1: chrY_1870474_1870572
seq2: B6Ng01-112G05.g_333_431

seq1  TCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTA  50

seq1  CAGGGGAACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAGTGG  99
      ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGG  99