BAC Information

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BAC

Clone NameB6Ng01-112K22
ChromosomeY (Build37)6 (Build37)
Map Location 1,870,471 - 1,870,59021,602,231 - 21,602,477
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112K22.bB6Ng01-112K22.g
ACCDH918682DH918683
length980247
definitionDH918682|Mus musculus domesticus DNA, BAC clone: B6Ng01-112K22, 5' end.DH918683|Mus musculus domesticus DNA, BAC clone: B6Ng01-112K22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,471 - 1,870,590)(21,602,231 - 21,602,477)
sequence
gaattctttagcaatcttgaaaagacaatatagttcaatatagaaacaca
cacaatagcagggctatgagtgatagctaaaactactaaagaataaaaga
actgctgtgtatatcatcatcttcaattccttgttgtattactgaattat
agtattgaaaagtgcatggtattgacataacagagaagatgatcgctgga
atcaaattgaagaccaaatatacttgtgagcacctaatatttttttatta
aaaaaagctagaaatacgcactggaagaaagataacatcttcaacaaatg
ttgcttgtcaaactatatggatgttttaggagaacttcaagtaaatctgt
accaatcaccttgcataaaactcagctccaaatggatcaaagacttcacc
atcactggaaagagaggcccattggacacgcaaactttatatgccccagt
acaggggaacgccagggccaaaaaaggggagtgggtgggtggctatgggg
gacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaa
aatggaaaaaaaaagaaaaaaaaaattcaccatagagccagatgcactaa
acctgatagtagaaaaagcaaggaatagccctgaactcattggcatggga
aaaaatttctaaacataatatgttatcacaagtatcaagatcaacaatta
atagatgggacctcatgaaactgaaaagcatctgtatggcagaggacaca
ccatttgggaaaaagcagcaacttacaagatggaaaatgatttttataaa
atatacatgcataaaagactattatttaaaatatatacaaaccgaaaaaa
acagatataagaaacaaataacccattttttaagttaggggtacagttct
aacagagaattctccaagaaaaatatcacatgactgactaacgcttaaag
aagtgtcaagatccctagccatcaggattt
attgagtctttaacaacatcagctataacaagcactgtgtacaaacatat
agataaatacatttgaggcataacttctctattttctctggtacatgtga
gctttgaaattaaacactaatcagattaagaagcaaaacatataaatgca
tttaatgtgatttgtgtatgtgtctatttgatgtatgggtgtgcttatgt
ttgtacacatgtgagtaagtgtgtgtgtgtatgtgtgtggtgtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870471_1870590
seq2: B6Ng01-112K22.b_446_547

seq1  CCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCA  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCA  50

seq1  GTACAGGGGAACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAGT  100
      ||||||||||||||||||||||||||                ||||||||
seq2  GTACAGGGGAACGCCAGGGCCAAAAA----------------AGGGGAGT  84

seq1  GGGGGTGGGTGGCTATGGGG  120
        ||||||||||||||||||
seq2  --GGGTGGGTGGCTATGGGG  102

seq1: chr6_21602231_21602477
seq2: B6Ng01-112K22.g_76_322 (reverse)

seq1  GCACACACCACACACATACACACACACACTTACTCACATGTGTACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCACACACATACACACACACACTTACTCACATGTGTACAAACA  50

seq1  TAAGCACACCCATACATCAAATAGACACATACACAAATCACATTAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACACCCATACATCAAATAGACACATACACAAATCACATTAAATGC  100

seq1  ATTTATATGTTTTGCTTCTTAATCTGATTAGTGTTTAATTTCAAAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGTTTTGCTTCTTAATCTGATTAGTGTTTAATTTCAAAGCTCA  150

seq1  CATGTACCAGAGAAAATAGAGAAGTTATGCCTCAAATGTATTTATCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCAGAGAAAATAGAGAAGTTATGCCTCAAATGTATTTATCTATA  200

seq1  TGTTTGTACACAGTGCTTGTTATAGCTGATGTTGTTAAAGACTCAAT  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTACACAGTGCTTGTTATAGCTGATGTTGTTAAAGACTCAAT  247