BAC Information

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BAC

Clone NameB6Ng01-113D06
ChromosomeY (Build37)18 (Build37)
Map Location 1,120,572 - 1,120,85862,260,076 - 62,261,124
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113D06.bB6Ng01-113D06.g
ACCDH919058DH919059
length4751,043
definitionDH919058|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D06, 5' end.DH919059|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,572 - 1,120,858)(62,260,076 - 62,261,124)
sequence
gaattctttgtttagttctgtaccccatttttaatggggttatttgaata
tctagagtccaccttattgagctctttgtatatattggatattagtcccc
tatcagatttagggttggtaaaaatcctttcccaatctgttggtggtctt
tttgtcttattgacagtatcttttgccttacagaagctttccaattttat
ttttttcttttttttctttttcttttattaggtattttcctcgtttacat
tttcaatgctatcccaaaggtcccccatacccccccaatctcctactcac
ccactgcccctttttggccctggtgttcccctgtactggggcatataaag
tttgcaagtccaaggggcctctctttgcagtgatgaccgactaggccatc
ttttgatacatatgcagctaaagacaagagctcccgggtactggttagtt
catattgttgttccacctatagggt
gaattccttagtaaagccattcatcatgcttgcttctaacctacgtgctt
cctgatgcaagtgaggctgtcttccagctgacacaactgaccggaagtcc
cgccggaagtcaggagctggatatataaagggaagcaaggctccatttct
tctctctaactgtgtatctttgagataggaagccctgtgctgggtaaata
aactcagccctgctgtaccgagggaaagaacctccagcgtaacaagcact
ctgtaagtcagtcaccgagggttgggtgatgtggtcacgtgctccccccc
tccccttcttcccatctcccccatctggcttttttgtcacattctctgtt
gtgtgatacgattgttcaggctactgctctaaggtcaaagggaagactgg
gaacgaaaaggcagaaagctcaccttgagccttgagtgtgaccttcgaca
agcctctaccctttgtgagactctggttccttccatgggatgtaaggggc
tcctttcatcggagcatgtctgaggtgccaccaccatcaacgttctgaca
ttctggagtgtattgtccaaccaagccagtgagagcaagccacggcttgg
acttctcctgagggtccagtggatgggccctcccaataaacttgcccacg
gattggagcaggctgtttctccaaagctctggtgagagttgactgggcca
cacctttggccgtgtcccagaaacatctggaatgtgcttatcagagtgca
tcggactccttagtctgacacttccaccgtccaaataccaagagagatca
gagctggcaggaggtggagcccaggggctgggccgccagatcagcgtttc
caccctgctgctgttttgacagtctgctcagaaagactaagttctgtcga
tgctttcagaacactgactaagtgttctccgagtggtttggtcctcagag
cactgaagggagggcccttggggacactgtagcttcgtgaagtcactcct
gtgctatcgatttgaaaggttctaatagagagggtggcggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120572_1120858
seq2: B6Ng01-113D06.b_242_522

seq1  TTTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCAT  50
      |||| |||||||  ||||||| |   | |||||||||||||||  ||| |
seq2  TTTTATTTTTTTCTTTTTTTTCTTTTTCTTTTATTAGGTATTTTCCTCGT  50

seq1  TTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCAC  100
      |||||||| ||||||||| ||||| ||||||||||      | |||||| 
seq2  TTACATTTTCAATGCTATCCCAAAGGTCCCCCATA------CCCCCCCAA  94

seq1  TCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTG  150
      || ||| | |||||||| |||||||||||||||||| |||||||||||||
seq2  TCTCCTACTCACCCACTGCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTG  144

seq1  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  200
      ||||||||||||||||||||||||| |||||||||||| |||||||| ||
seq2  GGGCATATAAAGTTTGCAAGTCCAAGGGGCCTCTCTTTGCAGTGATGACC  194

seq1  GACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGG  250
      |||||||||||||||||||| ||||||||||| || |||||||||| |||
seq2  GACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCGGG  244

seq1  TACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGT  287
      |||||||||| |||||  |||||||||||||||||||
seq2  TACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGT  281

seq1: chr18_62260076_62261124
seq2: B6Ng01-113D06.g_68_1110

seq1  GAATTCCTTAGTAAAGCCATTCATCATGCTTGCTTCTAACCTACGTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTAAAGCCATTCATCATGCTTGCTTCTAACCTACGTGCTT  50

seq1  CCTGATGCAAGTGAGGCTGTCTTCCAGCTGACACAACTGACCGGAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCAAGTGAGGCTGTCTTCCAGCTGACACAACTGACCGGAAGTCC  100

seq1  CGCCGGAAGTCAGGAGCTGGATATATAAAGGGAAGCAAGGCTCCATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGAAGTCAGGAGCTGGATATATAAAGGGAAGCAAGGCTCCATTTCT  150

seq1  TCTCTCTAACTGTGTATCTTTGAGATAGGAAGCCCTGTGCTGGGTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAACTGTGTATCTTTGAGATAGGAAGCCCTGTGCTGGGTAAATA  200

seq1  AACTCAGCCCTGCTGTACCGAGGGAAAGAACCTCCAGCGTAACAAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCCCTGCTGTACCGAGGGAAAGAACCTCCAGCGTAACAAGCACT  250

seq1  CTGTAAGTCAGTCACCGAGGGTTGGGTGATGTGGTCACGTGCTCCCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTCAGTCACCGAGGGTTGGGTGATGTGGTCACGTGCTCCCCCCC  300

seq1  TCCCCTTCTTCCCATCTCCCCCATCTGGCTTTTTTGTCACATTCTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTTCCCATCTCCCCCATCTGGCTTTTTTGTCACATTCTCTGTT  350

seq1  GTGTGATACGATTGTTCAGGCTACTGCTCTAAGGTCAAAGGGAAGACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATACGATTGTTCAGGCTACTGCTCTAAGGTCAAAGGGAAGACTGG  400

seq1  GAACGAAAAGGCAGAAAGCTCACCTTGAGCCTTGAGTGTGACCTTCGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAAAAGGCAGAAAGCTCACCTTGAGCCTTGAGTGTGACCTTCGACA  450

seq1  AGCCTCTACCCTTTGTGAGACTCTGGTTCCTTCCATGGGATGTAAGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTACCCTTTGTGAGACTCTGGTTCCTTCCATGGGATGTAAGGGGC  500

seq1  TCCTTTCATCGGAGCATGTCTGAGGTGCCACCACCATCAACGTTCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCATCGGAGCATGTCTGAGGTGCCACCACCATCAACGTTCTGACA  550

seq1  TTCTGGAGTGTATTGTCCAACCAAGCCAGTGAGAGCAAGCCACGGCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTGTATTGTCCAACCAAGCCAGTGAGAGCAAGCCACGGCTTGG  600

seq1  ACTTCTCCTGAGGGTCCAGTGGATGGGCCCTCCCAATAAACTTGCCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCTGAGGGTCCAGTGGATGGGCCCTCCCAATAAACTTGCCCACG  650

seq1  GATTGGAGCAGGCTGTTTCTCCAAAGCTCTGGTGAGAGTTGACTGGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAGCAGGCTGTTTCTCCAAAGCTCTGGTGAGAGTTGACTGGGCCA  700

seq1  CACCTTTGGCCGTGTCCCAGAAACATCTGGAATGTGCTTATCAGAGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGGCCGTGTCCCAGAAACATCTGGAATGTGCTTATCAGAGTGCA  750

seq1  TCGGACTCCTTAGTCTGACACTTCCACCGTCCAAATACCAAGAGAGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACTCCTTAGTCTGACACTTCCACCGTCCAAATACCAAGAGAGATCA  800

seq1  GAGCTGGCAGGAGGTGGAGCCCAGGGGCTGGGCCGCCAGATCAGCGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCAGGAGGTGGAGCCCAGGGGCTGGGCCGCCAGATCAGCGTTTC  850

seq1  CACCCTGCTGCTGTTTTGACAGTTCTGCTCGGAAAGACTAAGTTCTGTCG  900
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CACCCTGCTGCTGTTTTGACAG-TCTGCTCAGAAAGACTAAGTTCTGTCG  899

seq1  ATGC-TTCAGAACACTGACTAAGTTGTTCTCCCGAGTGGTTT-GTCCTCA  948
      |||| |||||||||||||||||| |||||| ||||||||||| |||||| 
seq2  ATGCTTTCAGAACACTGACTAAG-TGTTCT-CCGAGTGGTTTGGTCCTC-  946

seq1  AGAGCAACTG-AGGGAGGGCCCTTGGGGACACTGAAAGCTTCGTGAAGTC  997
      ||||| |||| |||||||||||||||||||||||  ||||||||||||||
seq2  AGAGC-ACTGAAGGGAGGGCCCTTGGGGACACTG-TAGCTTCGTGAAGTC  994

seq1  ACTCCTGTGCCTAATGATTTTGAAAAGTATCTAATTAGAGA-GGTGGCGG  1046
      ||||||||| |||  || ||||||| || ||||| |||||| ||||||||
seq2  ACTCCTGTG-CTATCGA-TTTGAAAGGT-TCTAA-TAGAGAGGGTGGCGG  1040

seq1  CAG  1049
      |||
seq2  CAG  1043