BAC Information

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BAC

Clone NameB6Ng01-113K12
Chromosome1 (Build37)Y (Build37)
Map Location 99,115,065 - 99,116,0461,120,568 - 1,120,769
singlet/doubletsingletsinglet
Overlap geneEG634331
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1
Downstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K12.bB6Ng01-113K12.g
ACCDH919394DH919395
length995707
definitionDH919394|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K12, 5' end.DH919395|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,115,065 - 99,116,046)(1,120,568 - 1,120,769)
sequence
gaattctccattaatttatgaattaattcagccatagatgccacactttc
agcagttaagagacacatagtggctacctacatatgtgaaaatttttcat
tatcaaagaatcgatttgccaaagcactactgttgttgaagaatttgcct
tctaaaacacacaaagctttattgtgtttaacataaatcacttgccattc
aatgacaaatgtgattattataatgtgtgcacatgaatgatgtatatatt
catactgactttgatataagtaaagattattttccttgttacctataggt
gcaaacaagctaagacttgagaaaagaaaggaacctcccaggattgacag
gagacttaaagataaagaaattaagcctaatttgaaaggtgttcttcatg
ctacttgggtaaagtaaaatatttctgttaacaagccagttgaattcaac
tgtgaaattttcttatagagttaagaatatgacaaggtccttattacaag
ttggaacatcttctgggtatatgcgcaagagaagaattgctggatcttct
ggtagtactatgtccaattttctgaggaaccgccagactgatttccagat
tggttgtaccagcttgcaatcccaccaactatggaggagtgtttgtcttt
ctccacatcctcgccagcatctgctctcacctgaatttttgatcttagcc
attctgactggtgtgagatggaatctcagggttcttttgatttgcatttc
cctgatgattaaggatgttgaacatttttcaggtgcttctcagacactca
gtattcctcagctgataaatgctccactatgttcattagcagccttattt
aaatagctagaagctggaaagaacccagatttccctcaacagaggaatgg
attcagaaaatgtggtacattgcacaatggagtactactcagaattaaaa
acaatgaattcatgaaatttttaggcaaatggatgcatctggagg
gaattccagggtcattttgatttgcatttctcagaagactgaggactttt
aaacattcctttcagtgctttttagacattcaactttcttctgttgtgaa
ttttttgtttagctttgtatgtcattttatgattgggttgtttggtttct
tgatggtaagcttcttgagttcttttttttttttttgggcaagaatgaat
ttatttattttttttttccattttttattaggtatttagctcatttacat
ttccaatgctataccaaaagacccccgtacccacccacccccactcccct
acccacccactccccccctttggccctggcgttcccctgtaccggggcac
acaaagtctgcgtgtccaatgggcctctctttccagtgatggaatttgga
tattagtcatccattggatgtggagttagtgaagactttcccccaatcta
taggttgttgatttgtcctattggctatgtcctttgccttatagaagctt
tccagtttcatgaggtcccatttattattttctatttatcttagagccag
aaccattggagtctggttttaggaaaatttctccctgtgccaatgagttc
aaggctctcacttttttcttctactagaattcagtgcacctgtttttatg
tttgaggttgttgatccactttgatttgagctttgcgaaaggtgacaaat
atgggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99115065_99116046
seq2: B6Ng01-113K12.b_49_1028

seq1  GAATTCTCCATTAATTTATGAATTAATTCAGCCATAGATGCCACACTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTAATTTATGAATTAATTCAGCCATAGATGCCACACTTTC  50

seq1  AGCAGTTAAGAGACACATAGTGGCTACCTACATATGTGAAAATTTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAGAGACACATAGTGGCTACCTACATATGTGAAAATTTTTCAT  100

seq1  TATCAAAGAATCGATTTGCCAAAGCACTACTGTTGTTGAAGAATTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGAATCGATTTGCCAAAGCACTACTGTTGTTGAAGAATTTGCCT  150

seq1  TCTAAAACACACAAAGCTTTATTGTGTTTAACATAAATCACTTGCCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACACACAAAGCTTTATTGTGTTTAACATAAATCACTTGCCATTC  200

seq1  AATGACAAATGTGATTATTATAATGTGTGCACATGAATGATGTATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAATGTGATTATTATAATGTGTGCACATGAATGATGTATATATT  250

seq1  CATACTGACTTTGATATAAGTAAAGATTATTTTCCTTGTTACCTATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGACTTTGATATAAGTAAAGATTATTTTCCTTGTTACCTATAGGT  300

seq1  GCAAACAAGCTAAGACTTGAGAAAAGAAAGGAACCTCCCAGGATTGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGCTAAGACTTGAGAAAAGAAAGGAACCTCCCAGGATTGACAG  350

seq1  GAGACTTAAAGATAAAGAAATTAAGCCTAATTTGAAAGGTGTTCTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAAAGATAAAGAAATTAAGCCTAATTTGAAAGGTGTTCTTCATG  400

seq1  CTACTTGGGTAAAGTAAAATATTTCTGTTAACAAGCCAGTTGAATTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGGTAAAGTAAAATATTTCTGTTAACAAGCCAGTTGAATTCAAC  450

seq1  TGTGAAATTTTCTTATAGAGTTAAGAATATGACAAGGTCCTTATTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTTTCTTATAGAGTTAAGAATATGACAAGGTCCTTATTACAAG  500

seq1  TTGGAACATCTTCTGGGTATATGCGCAAGAGAAGAATTGCTGGATCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACATCTTCTGGGTATATGCGCAAGAGAAGAATTGCTGGATCTTCT  550

seq1  GGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAT  600

seq1  TGGTTGTACCAGCTTGCAATCCCACCAACTATGGAGGAGTGTTTGTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTACCAGCTTGCAATCCCACCAACTATGGAGGAGTGTTTGTCTTT  650

seq1  CTCCACATCCTCGCCAGCATCTGCTCTCACCTGAATTTTTGATCTTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATCCTCGCCAGCATCTGCTCTCACCTGAATTTTTGATCTTAGCC  700

seq1  ATTCTGACTGGTGTGAGATGGAATCTCAGGGTTCTTTTGATTTGCATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACTGGTGTGAGATGGAATCTCAGGGTTCTTTTGATTTGCATTTC  750

seq1  CCTGATGATTAAGGATGTTGAACATTTTTCAGGTGCTTCTCAGACACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATTAAGGATGTTGAACATTTTTCAGGTGCTTCTCAGACACTCA  800

seq1  GTATTCCTCAGCTGATAAATGCTCCACTATGTTCA-TAGCAGCCTTATTT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTATTCCTCAGCTGATAAATGCTCCACTATGTTCATTAGCAGCCTTATTT  850

seq1  ATAATAGCTAGAAGCTGGAAAGAACCCAGATTTCCCTCAACAGAGGAATG  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-AATAGCTAGAAGCTGGAAAGAACCCAGATTTCCCTCAACAGAGGAATG  899

seq1  GATTCAGAAAATGTGGTACATTTGCACAATGGAGTACTACTCAGGAATTA  949
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  GATTCAGAAAATGTGGTACA-TTGCACAATGGAGTACTACTCA-GAATTA  947

seq1  AAAACAATGAATTCATGAAATTTTTAGGCAAAT  982
      |||||||||||||||||||||||||||||||||
seq2  AAAACAATGAATTCATGAAATTTTTAGGCAAAT  980

seq1: chrY_1120568_1120769
seq2: B6Ng01-113K12.g_242_460

seq1  TTTTTTTTTTTTT-----------------TTTAATTTTTTTTTCCATTT  33
      |||||||||||||                 |||| |||||||||||||||
seq2  TTTTTTTTTTTTTGGGCAAGAATGAATTTATTTATTTTTTTTTTCCATTT  50

seq1  TTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCC  83
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  TTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGACC  100

seq1  CCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGG  133
      ||| || |||||||||||||||||||| |||||||||||||||  |||||
seq2  CCCGTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTTTGG  150

seq1  CCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGG  183
      ||||||  ||||||||||| |||||| | ||||| |||  ||||||||||
seq2  CCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGG  200

seq1  CCTCTCTTTCCAGTGATGG  202
      |||||||||||||||||||
seq2  CCTCTCTTTCCAGTGATGG  219