BAC Information

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BAC

Clone NameB6Ng01-113K18
Chromosome6 (Build37)Y (Build37)
Map Location 65,090,066 - 65,090,4121,120,565 - 1,120,791
singlet/doubletsingletsinglet
Overlap genePtgds2
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1
Downstream geneLOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K18.bB6Ng01-113K18.g
ACCDH919406DH919407
length347500
definitionDH919406|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K18, 5' end.DH919407|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,090,066 - 65,090,412)(1,120,565 - 1,120,791)
sequence
caagtcaatgtgtctatgaatagtttatgtaagctatttaatactaactt
ttgtaaaactgtaagctgtgaagttattatatactcaaagaaattccaca
atacacactaagagaaggcttagtgccctagctagagtttttgtttttgt
ggttttttttttttttttttttttttgcctctcttcatctctgtggctat
aatcccttgctactgaagcaggcctgcctcaacggataaaggtaggatgt
gttcccaccaagttcactgaagtgcaaggccagcagaaagagagagggag
agggaaaaagagagagagagagagagagagagagagagagagagaga
gaattccttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtatcttttgccttgcagaaactttggagtttct
ttaggtcccatttgtcaattctcgatcttttttttttttttttttttttt
ttttttttttttttttttgaacattaggattaattttattgttaattttt
tttcccttttttattagggatttaactcatttacatttccaatggtatac
caaaagtccccaatacccacccacccccactcccctaaccacccactccc
cctttttggccctggggttcccctgttctgggggatataaagtttgggtg
tccaatgggcctctctttccagtgatggccgaataggccatcctttgaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65090066_65090412
seq2: B6Ng01-113K18.b_55_401

seq1  CAAGTCAATGTGTCTATGAATAGTTTATGTAAGCTATTTAATACTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAATGTGTCTATGAATAGTTTATGTAAGCTATTTAATACTAACTT  50

seq1  TTGTAAAACTGTAAGCTGTGAAGTTATTATATACTCAAAGAAATTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAACTGTAAGCTGTGAAGTTATTATATACTCAAAGAAATTCCACA  100

seq1  ATACACACTAAGAGAAGGCTTAGTGCCCTAGCTAGAGTTTTTGTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTAAGAGAAGGCTTAGTGCCCTAGCTAGAGTTTTTGTTTTTGT  150

seq1  GGTTTTTTTTTTTTTTTTTTTTTTTTGCCTCTCTTCATCTCTGTGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTTTTTTTTTTTTGCCTCTCTTCATCTCTGTGGCTAT  200

seq1  AATCCCTTGCTACTGAAGCAGGCCTGCCTCAACGGATAAAGGTAGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTGCTACTGAAGCAGGCCTGCCTCAACGGATAAAGGTAGGATGT  250

seq1  GTTCCCACCAAGTTCACTGAAGTGCAAGGCCAGCAGAGAGAGAGAGGGAG  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTCCCACCAAGTTCACTGAAGTGCAAGGCCAGCAGAAAGAGAGAGGGAG  300

seq1  AGGGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  347
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  347

seq1: chrY_1120565_1120791
seq2: B6Ng01-113K18.g_294_569

seq1  ---------------------------ATCTTTTTTTTTTTTTT------  17
                                  | ||||||||||||||      
seq2  ATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAT  50

seq1  -----TTAAT-----------TTTTTTTTCCATTTTTTATTAGGTATTTA  51
           |||||           |||||||||| |||||||||||| |||||
seq2  TAGGATTAATTTTATTGTTAATTTTTTTTCCCTTTTTTATTAGGGATTTA  100

seq1  ACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCAC  101
      |||||||||||||||||||| |||||||||||||||| ||| ||||||||
seq2  ACTCATTTACATTTCCAATGGTATACCAAAAGTCCCCAATACCCACCCAC  150

seq1  CCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCT  151
      ||||||||||||  |||||||||||||||||||||||||||  |||||||
seq2  CCCCACTCCCCTAACCACCCACTCCCCCTTTTTGGCCCTGGGGTTCCCCT  200

seq1  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTG  201
      || |||||| ||||||||||||   |||||||||||||||||||||||||
seq2  GTTCTGGGGGATATAAAGTTTGGGTGTCCAATGGGCCTCTCTTTCCAGTG  250

seq1  ATGGCCGACTAGGCCATCTTTTGATA  227
      |||||||| ||||||||| ||||| |
seq2  ATGGCCGAATAGGCCATCCTTTGAAA  276