BAC Information

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BAC

Clone NameB6Ng01-115A06
ChromosomeY (Build37)2 (Build37)
Map Location 1,870,359 - 1,870,43747,691,287 - 47,692,431
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A06.bB6Ng01-115A06.g
ACCDH920388DH920389
length5001,133
definitionDH920388|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A06, 5' end.DH920389|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,359 - 1,870,437)(47,691,287 - 47,692,431)
sequence
gaattcaaatgatatatactcactgataagttgatattagcccacaaact
tagtatacccgagatataaggtacaatttgcaaaacacatgaaactgaag
aagaatgaaaaccaaagtgtggacactttgccccttcttagaaatgggaa
aaaacacccatgcaaggagttacagagacaaagtttgaagttgagtcaaa
aggatggaccatctagagactgccatatccagggatccattccataatca
gcctccaaaagatgacaccattgcatacactagtaagattttgctgaaat
gaccctgatatagcagtctcttgtgagactatcccggggtctagcaaaca
cataagtggatgctcacagtcagctattggatggatcacagggcccccat
tgtaggagctggagaatgtatccaaggatctaaagggttctgcaacccta
taggtggaacaacattatgaactaaccagtaccccagagcttttgactct

gaattcataactgacatcattttgagcaactatccatgaaataatcacca
taaaacagctcatactattttctagaaagaaaatatttaataattgaggg
ttgattttttgttcttttcacatacactgctttgaaagcgattgagtgag
aagagaatttcacatagggcaataaaatgtacagtgcccaactgaatggc
aagagagactgattcaccagttctggtattaggaatgtaaatatgtaatc
catttatgttgtctaaagatacctcctactatggcatcctgtcccttttg
gcagagaatgttctccctagcaacactatatccatatcttcagccttgtt
tcaataatgctctagagaagtgtcttcagaaagaatggaagagacttgtt
tgtgaatgagtgaaagagaagtatgtggttatcagtgacaactttggagc
atgggctgcaagctgagctaatgagttgtagtatctttacgcagcttcat
ttaacactaaaatctgatgtatcctagcctgatattgtggcacactgctt
tagtgcccgcattcacgaggcaaaagcagaacagtctctgtgagtttgag
gccaaagtgttctacttggtgaatttcagacccaccagagatacacaggg
agactctgtctcaaaacaaaaacagaaaacacaacagaaatgatataaac
ttgatgatgattccttgtgaaggatgagtttaagagtaaattttatgtat
acattttattgaagtctcatgtctaacactggttcctgtggttcctctat
gggatatgaggaaagaatccacactgtgcaaaatttttcctatgttcatc
aaaattgtttcaacattgcatgtaaatgaataaaacacagagtcagaaga
gctgctcgctgatgtgtaatgacctcagatttcccaattgtttgtatcaa
tattactgtaacatccagtagcccagctgtgagctaacataccctactgg
ctatatttacctgacttcccattagaggtctaaaggagtattgtcaggag
gtgtactcatcactgttgatactgatgtgctatagctgcatgacgttatc
tgcaaggcccatttctgtccatgctgaagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870359_1870437
seq2: B6Ng01-115A06.b_467_545

seq1  CCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAA  50
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  CCAAGGATCTAAAGGGTTCTGCAACCCTATAGGTGGAACAACATTATGAA  50

seq1  CTAACCATTACCCCTGAGCTCTTGACTCT  79
      ||||||| |||||| ||||| ||||||||
seq2  CTAACCAGTACCCCAGAGCTTTTGACTCT  79

seq1: chr2_47691287_47692431
seq2: B6Ng01-115A06.g_66_1198 (reverse)

seq1  ATTTCTTTCAGCAATGGACAGGAAATGGGCTTTTGCAGATTACTGTTTCA  50
      ||||| |||||| ||||||| |||||||||  |||||||| ||    |||
seq2  ATTTC-TTCAGC-ATGGACA-GAAATGGGC-CTTGCAGATAAC---GTCA  43

seq1  TGCAGCCTATAGCAACATCAGTATCAACAGTGATGAGTACA-CTTCTGAC  99
      ||||| ||||||| ||||||||||||||||||||||||||| || |||||
seq2  TGCAG-CTATAGC-ACATCAGTATCAACAGTGATGAGTACACCTCCTGAC  91

seq1  AATACTCCTTTAGACCTCCTAATTGGGAGGTCAGGTAAATATTAGCCAGT  149
      ||||||||||||||||| |||| ||||| |||||||||||| ||||||||
seq2  AATACTCCTTTAGACCT-CTAA-TGGGAAGTCAGGTAAATA-TAGCCAGT  138

seq1  AGGGTATGTTAGCTCACAGCTGGGCCTACTGGATGTTACAGTAATATTGA  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGTATGTTAGCTCACAGCTGGG-CTACTGGATGTTACAGTAATATTGA  187

seq1  TACAAACAATTGGGAAATCTGAGGTCATTACACATCAGCGAGCAGCTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAATTGGGAAATCTGAGGTCATTACACATCAGCGAGCAGCTCTT  237

seq1  CTGACTCTGTGTTTTATTCATTTACATGCAATGTTGAAACAATTTTGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGTGTTTTATTCATTTACATGCAATGTTGAAACAATTTTGATG  287

seq1  AACATAGGAAAAATTTTGCACAGTGTGGATTCTTTCCTCATATCCCATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGGAAAAATTTTGCACAGTGTGGATTCTTTCCTCATATCCCATAG  337

seq1  AGGAACCACAGGAACCAGTGTTAGACATGAGACTTCAATAAAATGTATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCACAGGAACCAGTGTTAGACATGAGACTTCAATAAAATGTATAC  387

seq1  ATAAAATTTACTCTTAAACTCATCCTTCACAAGGAATCATCATCAAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTACTCTTAAACTCATCCTTCACAAGGAATCATCATCAAGTTT  437

seq1  ATATCATTTCTGTTGTGTTTTCTGTTTTTGTTTTGAGACAGAGTCTCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTTCTGTTGTGTTTTCTGTTTTTGTTTTGAGACAGAGTCTCCCT  487

seq1  GTGTATCTCTGGTGGGTCTGAAATTCACCAAGTAGAACACTTTGGCCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTCTGGTGGGTCTGAAATTCACCAAGTAGAACACTTTGGCCTCA  537

seq1  AACTCACAGAGACTGTTCTGCTTTTGCCTCGTGAATGCGGGCACTAAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAGACTGTTCTGCTTTTGCCTCGTGAATGCGGGCACTAAAGC  587

seq1  AGTGTGCCACAATATCAGGCTAGGATACATCAGATTTTAGTGTTAAATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCCACAATATCAGGCTAGGATACATCAGATTTTAGTGTTAAATGA  637

seq1  AGCTGCGTAAAGATACTACAACTCATTAGCTCAGCTTGCAGCCCATGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGTAAAGATACTACAACTCATTAGCTCAGCTTGCAGCCCATGCTC  687

seq1  CAAAGTTGTCACTGATAACCACATACTTCTCTTTCACTCATTCACAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGTCACTGATAACCACATACTTCTCTTTCACTCATTCACAAACA  737

seq1  AGTCTCTTCCATTCTTTCTGAAGACACTTCTCTAGAGCATTATTGAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTCCATTCTTTCTGAAGACACTTCTCTAGAGCATTATTGAAACA  787

seq1  AGGCTGAAGATATGGATATAGTGTTGCTAGGGAGAACATTCTCTGCCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAGATATGGATATAGTGTTGCTAGGGAGAACATTCTCTGCCAAA  837

seq1  AGGGACAGGATGCCATAGTAGGAGGTATCTTTAGACAACATAAATGGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGGATGCCATAGTAGGAGGTATCTTTAGACAACATAAATGGATT  887

seq1  ACATATTTACATTCCTAATACCAGAACTGGTGAATCAGTCTCTCTTGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTACATTCCTAATACCAGAACTGGTGAATCAGTCTCTCTTGCCA  937

seq1  TTCAGTTGGGCACTGTACATTTTATTGCCCTATGTGAAATTCTCTTCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGGGCACTGTACATTTTATTGCCCTATGTGAAATTCTCTTCTCA  987

seq1  CTCAATCGCTTTCAAAGCAGTGTATGTGAAAAGAACAAAAAATCAACCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCGCTTTCAAAGCAGTGTATGTGAAAAGAACAAAAAATCAACCCT  1037

seq1  CAATTATTAAATATTTTCTTTCTAGAAAATAGTATGAGCTGTTTTATGGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTAAATATTTTCTTTCTAGAAAATAGTATGAGCTGTTTTATGGT  1087

seq1  GATTATTTCATGGATAGTTGCTCAAAATGATGTCAGTTATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTCATGGATAGTTGCTCAAAATGATGTCAGTTATGAATTC  1133