BAC Information

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BAC

Clone NameB6Ng01-115D06
ChromosomeY (Build37)9 (Build37)
Map Location 2,652,627 - 2,652,7008,154,869 - 8,155,676
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D06.bB6Ng01-115D06.g
ACCDH920528DH920529
length1,029808
definitionDH920528|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D06, 5' end.DH920529|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,652,627 - 2,652,700)(8,154,869 - 8,155,676)
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaagcagagtacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacaggatgt
cagcgccatcttgtaacggcgaatgtgggcgcggctcccaacatctcccc
ctttccttttaataagagcaaataggccacccatattaatgagagtggag
atagaggtcaaatccccagtgtgtaggtaaaggagccatgtacaggatta
gctcttaggctcacaggcttttacccagagcaaccctgacctgctcccgt
gtcgttttgcctggagagaaggacacttggacactcaaccttcttgaaag
atgacatgtctccctagaataggctcatatatgccgcagagcctttctat
tgcagtgcttagccttgcaactctctcgggctgctgaagcacactcactc
tatcccgtgcaatgagtctagcctcatgggatataagagctgagtggcca
gcgacctattgcctaagcatagatatatcaggggaagctccatgttctag
tcctgcaagcgcctgggcaataaccaccttgtctctcctagtttgggcct
taagcttacagaccaatcaaagaagcaacactaatccacagcaaagtgta
tctccaaataatattaatcccacccattttttaaagaaagaaaatgctga
ggagatccaattgggtaatcctttggtcagcgacaggtccaagcgcgtgg
agttgacctgaagtctcaattcccgaagggatctgttcaaattcagccat
ccaattctgtaacatatactgaaaaagactttttgacaatttagctgccc
tagtaaatttctcatactgaatggaaataacacacaatcccggaaacttt
tgttcacatcccagctgagttatttgtcataatacatctagttgtatctg
gacaagatctatgagttgattaaccagca
gaattcactttgttcccataagacagatgtggaaattcaggggagaacta
agagaaagcaagagactagaaatatgaatgagagatgcagctggatgaaa
tagactcaacactgttagaaattattaatgccattctagtgctaggctaa
ataagcatagaaatacttaccttttcaaaagaaatctgtgaaatatgggc
ccttttggtaaagaggacaccattactgttgttgtcacagatgagaatct
ctcagtctgggaaacagtcatagttgatgtttatttcctgggtcatcgta
gttttattgttgttgatatttaaaatattttatttttatgtgtgtgtgtt
ttgtctacatgagtgtatgtatgtgtaccacatacatgaagtgcctgagg
aggccagaagctgttagatcccttggaatctgagttaaagctggctacaa
accactgagtcctctagaaaagaagtcagtgcttttaactactgagtcat
ctctcagggatgttttttggtgttaaaaatattagacacctatagggttg
cagatccctttagctccttgggtactttctctagctcctccattgggggc
cctgtgttccatccaatagctgactgtgagcatccacttctgtgtttgct
aggcccaagaatagcctcacaagagacagctatatcagggtcctttcagc
aaaatcttgctagtgtatgcaatggtgagaggcccattggtcttgcaaac
tttatatgcctaagtacaggggaactccagggccaagaagtgggagttgg
gggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2652627_2652700
seq2: B6Ng01-115D06.b_147_221 (reverse)

seq1  TCGCCATTACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAA  50
      ||||| ||||||||||||||||| |||| ||||||||| |||||||||||
seq2  TCGCCGTTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAA  50

seq1  TAGTCTGCGCATGTG-CTGGGGTAT  74
      || |||||||||||| |  ||||||
seq2  TAATCTGCGCATGTGCCAAGGGTAT  75

seq1: chr9_8154869_8155676
seq2: B6Ng01-115D06.g_68_875

seq1  GAATTCACTTTGTTCCCATAAGACAGATGTGGAAATTCAGGGGAGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTTCCCATAAGACAGATGTGGAAATTCAGGGGAGAACTA  50

seq1  AGAGAAAGCAAGAGACTAGAAATATGAATGAGAGATGCAGCTGGATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCAAGAGACTAGAAATATGAATGAGAGATGCAGCTGGATGAAA  100

seq1  TAGACTCAACACTGTTAGAAATTATTAATGCCATTCTAGTGCTAGGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCAACACTGTTAGAAATTATTAATGCCATTCTAGTGCTAGGCTAA  150

seq1  ATAAGCATAGAAATACTTACCTTTTCAAAAGAAATCTGTGAAATATGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATAGAAATACTTACCTTTTCAAAAGAAATCTGTGAAATATGGGC  200

seq1  CCTTTTGGTAAAGAGGACACCATTACTGTTGTTGTCACAGATGAGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGTAAAGAGGACACCATTACTGTTGTTGTCACAGATGAGAATCT  250

seq1  CTCAGTCTGGGAAACAGTCATAGTTGATGTTTATTTCCTGGGTCATCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGGGAAACAGTCATAGTTGATGTTTATTTCCTGGGTCATCGTA  300

seq1  GTTTTATTGTTGTTGATATTTAAAATATTTTATTTTTATGTGTGTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTGTTGTTGATATTTAAAATATTTTATTTTTATGTGTGTGTGTT  350

seq1  TTGTCTACATGAGTGTATGTATGTGTACCACATACATGAAGTGCCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACATGAGTGTATGTATGTGTACCACATACATGAAGTGCCTGAGG  400

seq1  AGGCCAGAAGCTGTTAGATCCCTTGGAATCTGAGTTAAAGCTGGCTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAGCTGTTAGATCCCTTGGAATCTGAGTTAAAGCTGGCTACAA  450

seq1  ACCACTGAGTCCTCTAGAAAAGAAGTCAGTGCTTTTAACTACTGAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGTCCTCTAGAAAAGAAGTCAGTGCTTTTAACTACTGAGTCAT  500

seq1  CTCTCAGGGATGTTTTTTGGTGTTAAAAATATTAGACACCTATAGGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGATGTTTTTTGGTGTTAAAAATATTAGACACCTATAGGGTTG  550

seq1  CAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGC  600

seq1  CCTGTGTTCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCT  650

seq1  AGGCCCAAGAATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGAATAGCCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGC  700

seq1  AAAATCTTGCTAGTGTATGCAATGGTGAGAGGCCCATTGGTCTTGCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGCTAGTGTATGCAATGGTGAGAGGCCCATTGGTCTTGCAAAC  750

seq1  TTTATATGCCTAAGTACAGGGGAACTCCAGGGCCAAGAAGTGGGAGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCTAAGTACAGGGGAACTCCAGGGCCAAGAAGTGGGAGTTGG  800

seq1  GGGGGGGG  808
      ||||||||
seq2  GGGGGGGG  808