BAC Information

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BAC

Clone NameB6Ng01-115O17
Chromosome2 (Build37)Y (Build37)
Map Location 140,241,011 - 140,242,073385,617 - 385,744
singlet/doubletsingletsinglet
Overlap gene2900006F19Rik
Upstream geneC130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2
Downstream geneFlrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115O17.bB6Ng01-115O17.g
ACCDH921055DH921056
length1,062977
definitionDH921055|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O17, 5' end.DH921056|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,241,011 - 140,242,073)(385,617 - 385,744)
sequence
gaattctttgcatttcacactacacagcatagtcttccttccctccaacc
cactccattcactgtagcacaagcttcactaaagcatctgtaatctcatt
cctcgtcgtcatttttcttccatgcttaccatttcattaaaagtactttc
ttttacattgactaaaccttaaattaaaagtgcacgcgcttgagattttt
gctttttccaatactgttaagtattaagtaactcctttttttggtaaaga
gctctttactctgattcatttcattttacttaatattttcaaataatata
cttatttatgtgtatctggtattgtagctcatagcccctttgaagaagta
tagctttatcttcacagttgacaaagttctgctatacacagaactctagg
atcatcttggaatttactgaaattttcccagcatatcaaaaaaacaaatg
atactcagatttatttttagttcgatctttttcacttttcttggaaactt
aatttttctttgttggtagtccttgaaattaaaggtttgaatttaccaga
agttttcttcaatgtgccttatttgaaggtttctttcacatcaagaaagt
ttcataaaataataaaattttagtcactactgttttggttacacatacta
tatttactcccagaattcctgcttctcgcctaataattcaacattatcta
ctctatttaaactatgcttatatcatgtttaactatttttaccactttct
acaagaaaattcagtttgacggtcaatgtcactttttactttctcctttt
gctacaggtagaactcaaggccctagttcatgagaggtaagcaatcttca
aatgagttacatctccagccttacactatttaaaaaacaaaaacaaaatg
tattataaagcagctgaaatacacaaagtataaagttttacttaataaac
agctatgcattcactgctgtgcataaggaaaattttaatctggataacag
aaaaatgctatccttttcttctgaagaaaacagtttgatgttatcatgat
gttgaatttatg
gaattcctaaagctgataaacaacttcagcaaagtgactgcatataaaat
ggtggtgcatgcctttaaacccagcacttgggaggcagaggcaggcggat
ttctgagttagaggccagcctggactacagagtgagttccaggacagcca
gggctacacagagaaaccaccctgcctcaaaaaaccaaataaataaataa
ataaataaataaataaataaataaataaacaaacaaacaaactcaaacaa
atcagtacccttcctccactcaaaggataaacaggctgaggaagaaatta
ggaaaacaacacccttcacaatagtcacaaataatattacataccttggt
gtaactctaactaagcaagtgaaagatctgtatgacaagaacttcaagtc
tctgaagaaagaaattgaagaagatcttagaagatggaaagatctcccat
gctcatagattggcaggattaatataataaaaaatggacatcctgccaaa
agcagtctacagatgcaatgcgatccccatcaaaatttcaaatcaattct
tcatagtgttagaaagagcaatttgcaaattcatttggaataacaaaaaa
cccaggatagcaaaaactattcttttttttttccccattttttattaggt
atttagctcatttacatttccaatgctataccaaaagtcccccataccca
cccaccccaactcccctacccactcactccccctttttggccctggcgtt
cccctgtactggggcatataaagtttgcaagtccaatgggcctctctttg
cagtgatggccaactaggccatcttttgatacatatgcagctagagacaa
aagctcccggggtactgcttagtttcatattgttgttccacctatagggt
tgcagttccctttagtttccttgggtgctttctctagtttcctccattgg
gggccctgtggttcattcaataagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140241011_140242073
seq2: B6Ng01-115O17.b_46_1107 (reverse)

seq1  CATAAATTCAACATCATGATAACATCAAACTGTTTTCTTCAGGAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  CATAAATTCAACATCATGATAACATCAAACTGTTTTCTTCA-GAAGAAAA  49

seq1  GGATAGCATTTTTCTGTTATCCAGATTAAAATTTTCCTTATGCACAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCATTTTTCTGTTATCCAGATTAAAATTTTCCTTATGCACAGCAG  99

seq1  TGAATGCATAGCTGTTTATTAAGTAAAACTTTATACTTTGTGTATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCATAGCTGTTTATTAAGTAAAACTTTATACTTTGTGTATTTCAG  149

seq1  CTGCTTTATAATACATTTTGTTTTTGTTTTTTAAATAGTGTAAGGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTATAATACATTTTGTTTTTGTTTTTTAAATAGTGTAAGGCTGGA  199

seq1  GATGTAACTCATTTGAAGATTGCTTACCTCTCATGAACTAGGGCCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAACTCATTTGAAGATTGCTTACCTCTCATGAACTAGGGCCTTGAG  249

seq1  TTCTACCTGTAGCAAAAGGAGAAAGTAAAAAGTGACATTGACCGTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTGTAGCAAAAGGAGAAAGTAAAAAGTGACATTGACCGTCAAAC  299

seq1  TGAATTTTCTTGTAGAAAGTGGTAAAAATAGTTAAACATGATATAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTCTTGTAGAAAGTGGTAAAAATAGTTAAACATGATATAAGCAT  349

seq1  AGTTTAAATAGAGTAGATAATGTTGAATTATTAGGCGAGAAGCAGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAATAGAGTAGATAATGTTGAATTATTAGGCGAGAAGCAGGAATT  399

seq1  CTGGGAGTAAATATAGTATGTGTAACCAAAACAGTAGTGACTAAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTAAATATAGTATGTGTAACCAAAACAGTAGTGACTAAAATTTT  449

seq1  ATTATTTTATGAAACTTTCTTGATGTGAAAGAAACCTTCAAATAAGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATGAAACTTTCTTGATGTGAAAGAAACCTTCAAATAAGGCAC  499

seq1  ATTGAAGAAAACTTCTGGTAAATTCAAACCTTTAATTTCAAGGACTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAAAACTTCTGGTAAATTCAAACCTTTAATTTCAAGGACTACCA  549

seq1  ACAAAGAAAAATTAAGTTTCCAAGAAAAGTGAAAAAGATCGAACTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAAATTAAGTTTCCAAGAAAAGTGAAAAAGATCGAACTAAAAA  599

seq1  TAAATCTGAGTATCATTTGTTTTTTTGATATGCTGGGAAAATTTCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGAGTATCATTTGTTTTTTTGATATGCTGGGAAAATTTCAGTAA  649

seq1  ATTCCAAGATGATCCTAGAGTTCTGTGTATAGCAGAACTTTGTCAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAGATGATCCTAGAGTTCTGTGTATAGCAGAACTTTGTCAACTGT  699

seq1  GAAGATAAAGCTATACTTCTTCAAAGGGGCTATGAGCTACAATACCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAAGCTATACTTCTTCAAAGGGGCTATGAGCTACAATACCAGAT  749

seq1  ACACATAAATAAGTATATTATTTGAAAATATTAAGTAAAATGAAATGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAATAAGTATATTATTTGAAAATATTAAGTAAAATGAAATGAAT  799

seq1  CAGAGTAAAGAGCTCTTTACCAAAAAAAGGAGTTACTTAATACTTAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAAGAGCTCTTTACCAAAAAAAGGAGTTACTTAATACTTAACAG  849

seq1  TATTGGAAAAAGCAAAAATCTCAAGCGCGTGCACTTTTAATTTAAGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAAAAAGCAAAAATCTCAAGCGCGTGCACTTTTAATTTAAGGTTT  899

seq1  AGTCAATGTAAAAGAAAGTACTTTTAATGAAATGGTAAGCATGGAAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGTAAAAGAAAGTACTTTTAATGAAATGGTAAGCATGGAAGAAA  949

seq1  AATGACGACGAGGAATGAGATTACAGATGCTTTAGTGAAGCTTGTGCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACGACGAGGAATGAGATTACAGATGCTTTAGTGAAGCTTGTGCTAC  999

seq1  AGTGAATGGAGTGGGTTGGAGGGAAGGAAGACTATGCTGTGTAGTGTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGGAGTGGGTTGGAGGGAAGGAAGACTATGCTGTGTAGTGTGAA  1049

seq1  ATGCAAAGAATTC  1063
      |||||||||||||
seq2  ATGCAAAGAATTC  1062

seq1: chrY_385617_385744
seq2: B6Ng01-115O17.g_131_259 (reverse)

seq1  TTTGGTTTTTTGAGACA-GGTTTTCTCTATATATAGCCCTGGCTGTCCTG  49
      |||||||||||||| || |||  | ||| | | |||||||||||||||||
seq2  TTTGGTTTTTTGAGGCAGGGTGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  50

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCC  99
      ||||||||||||||| ||||||||||||| |||||||||||| |||||||
seq2  GAACTCACTCTGTAGTCCAGGCTGGCCTCTAACTCAGAAATCCGCCTGCC  100

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGC  128
      |||||||||| ||||||||| ||||||||
seq2  TCTGCCTCCCAAGTGCTGGGTTTAAAGGC  129