BAC Information

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BAC

Clone NameB6Ng01-116P03
ChromosomeY (Build37)
Map Location 1,120,554 - 1,121,062
singlet/doubletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116P03.bB6Ng01-116P03.g
ACCDH921815DH921816
length1,0131,203
definitionDH921815|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P03, 5' end.DH921816|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctacaagcagatttttttttctttccattttttattaggtat
ttagctcatttacatttccaatgctataccaaaagtgccccatacccacc
cacccccactcccctacccgcccactccccctttttggccctggcgttcc
cctgttctggggcatataaagtttgtgtgtccaatgggcctctctttcca
gtgatggccgactaggccctcttttgatacatatgcagctagagtcaaga
gctccggggtactggttagttcataatgttgatccacctatagggttgca
gatccctttagctccttgggtactttctctagctcctccattgggagccc
tgtgatccatccattagctgactgtgggcatccacttctgtgtttgctag
gccccggcatagtctcacaagagacagctacatctgggtcctttcgataa
aatcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatggg
gtggatccctggataaggcagtctctacatggtccaccctttaatctcag
ctccaaactttgtctctgtaactccttccaagggtgttttgttcccactt
ctaaggaggggcatagtgtccacacttcagtcttcatttttcttgagttt
catgtgtttaggaaattgtatcttatatcttgggtatcctaggttttggg
ctaatatccacttatcagtgagtacatatttgtgtgagttcctttgtgaa
tgtgttacctcactcaggatgatgccctccaggtccatccatttggctag
gaatttcataaattcattctttttaatagctgagtagtactccattgtgt
agatgtaccacattttctgtatccattcctctgttgaggggcatctgggt
tctttccagcttctggctattataaataattgctgctatgaacatagtgg
agcatgtgtcttcttaccagttggggcatcttctggatatatgccaggag
aggtattgcttgg
gaattccaggctaattagagctagtgagactgggccttgagtgagtgtgg
ttgtacacacctttaatcccagccccctgcagaggcaggtggatctcttt
gaactcaaggccaacttggtataaacagtgagtttcaagacagccagaga
tatgcagagagatcttgtattaaacaaacaaacaaaaaatgattattaat
gtgggtggcagaggctgcaggatcattgtactcttctacttttatgggtg
tgaaccctcaatgaaaagatatggctcacactttaaccccagcaaaccaa
aagcagaggcaggtggatctttgtgagctccaagccagcctgatctattt
agtgaatccaggccagccaaagttacatagtaaaatcctatctcaaaaaa
acaaaaacaaaacaaaaaaacaaaaaaaaaacaagcaaacaaaaggatat
gaatgtatttttagccaagttattcaagctgaggctgtcagtacctaagg
gccattttgttatctttaaaaaatattcctttttatttcacatgtttttg
tttgtatgtatgcttgtgtgccatgttcattaagccatgttagagtctgg
tgtccttggagaccagaagaagatgtcccctgaagtagagggacagttat
atggtgctatttgaatgcaggaaccaaacttaggttgtctggaagagcag
caaatacttttaacttttaagccacctcctcagcccccagtttgttattt
ttgcttctgaaactggagtccttcaatacaatgagaccatcattaaacac
aaggattattgggagctggagaaaaggtcccgtccataaagtgcttgtcc
ctctggtgtgaggaagagtccaattcccaacatcaaagtgaaaaaagctg
aatgtagcatgaagctggactcagacacagtacaggcaagatggaatgat
gcctaaggctagccattctagctcctggttcagtgagagacctggcctta
aaggaagttagatgtggcagctgtgcttgccttagtgcagagcaaggcag
tgatctttgattcaggcggcaaactgcctaaagaaccctgtgtctaacac
agcaatctcaacctggggtcgaggggtatttattgaatctggtaacgagt
tgcctcctattcctcaaggtaacttgtccggagaggaaccgtaaaggtga
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120554_1121062
seq2: B6Ng01-116P03.b_59_543

seq1  CAGATTTTGTCATCTTTTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTT  50
      ||||||||                        ||||| ||||||||||||
seq2  CAGATTTT------------------------TTTTTCTTTCCATTTTTT  26

seq1  ATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCC  100
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  ATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTGCCCC  76

seq1  ATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCC  150
      ||| |||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ATACCCACCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCC  126

seq1  TGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCT  200
      |||  ||||||||| |||||||||||||||||||   |||||||||||||
seq2  TGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCT  176

seq1  CTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTA  250
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTCTTTCCAGTGATGGCCGACTAGGCCCTCTTTTGATACATATGCAGCTA  226

seq1  GAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTAT  300
      |||||||||||||||||||||||||||| |||||| |||| |||||||||
seq2  GAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTAT  276

seq1  AGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCAT  350
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCAT  326

seq1  TGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGT  400
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  TGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGT  376

seq1  GTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCC  450
      ||||||| |||||||||||||||||||||||||||||||||||||  |||
seq2  GTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCC  426

seq1  TTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCT  500
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCT  476

seq1  GATTATGGG  509
      |||||||||
seq2  GATTATGGG  485